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Accurate noise-robust classification of Bacillus species from MALDI-TOF MS spectra using a denoising autoencoder.
Uvarova YE, Demenkov PS, Kuzmicheva IN, Venzel AS, Mischenko EL, Ivanisenko TV, Efimov VM, Bannikova SV, Vasilieva AR, Ivanisenko VA, Peltek SE. Uvarova YE, et al. Among authors: venzel as. J Integr Bioinform. 2023 Nov 20;20(3):20230017. doi: 10.1515/jib-2023-0017. eCollection 2023 Sep 1. J Integr Bioinform. 2023. PMID: 37978847 Free PMC article.
Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection.
Antropova EA, Khlebodarova TM, Demenkov PS, Volianskaia AR, Venzel AS, Ivanisenko NV, Gavrilenko AD, Ivanisenko TV, Adamovskaya AV, Revva PM, Kolchanov NA, Lavrik IN, Ivanisenko VA. Antropova EA, et al. Among authors: venzel as. J Integr Bioinform. 2023 Nov 20;20(3):20230013. doi: 10.1515/jib-2023-0013. eCollection 2023 Sep 1. J Integr Bioinform. 2023. PMID: 37978846 Free PMC article.
Computer analysis of regulation of hepatocarcinoma marker genes hypermethylated by HCV proteins.
Antropova EA, Khlebodarova TM, Demenkov PS, Venzel AS, Ivanisenko NV, Gavrilenko AD, Ivanisenko TV, Adamovskaya AV, Revva PM, Lavrik IN, Ivanisenko VA. Antropova EA, et al. Among authors: venzel as. Vavilovskii Zhurnal Genet Selektsii. 2022 Dec;26(8):733-742. doi: 10.18699/VJGB-22-89. Vavilovskii Zhurnal Genet Selektsii. 2022. PMID: 36714033 Free PMC article.
Reconstruction and analysis of the gene regulatory network for cell wall function in Arabidopsis thaliana L. leaves in response to water deficit.
Volyanskaya AR, Antropova EA, Zubairova US, Demenkov PS, Venzel AS, Orlov YL, Makarova AA, Ivanisenko TV, Gorshkova TA, Aglyamova AR, Kolchanov NA, Chen M, Ivanisenko VA. Volyanskaya AR, et al. Among authors: venzel as. Vavilovskii Zhurnal Genet Selektsii. 2023 Dec;27(8):1031-1041. doi: 10.18699/VJGB-23-118. Vavilovskii Zhurnal Genet Selektsii. 2023. PMID: 38239967 Free PMC article.
Gene networks for use in metabolomic data analysis of blood plasma from patients with postoperative delirium.
Ivanisenko VA, Basov NV, Makarova AA, Venzel AS, Rogachev AD, Demenkov PS, Ivanisenko TV, Kleshchev MA, Gaisler EV, Moroz GB, Plesko VV, Sotnikova YS, Patrushev YV, Lomivorotov VV, Kolchanov NA, Pokrovsky AG. Ivanisenko VA, et al. Among authors: venzel as. Vavilovskii Zhurnal Genet Selektsii. 2023 Dec;27(7):768-775. doi: 10.18699/VJGB-23-89. Vavilovskii Zhurnal Genet Selektsii. 2023. PMID: 38223851 Free PMC article.
Molecular-genetic pathways of hepatitis C virus regulation of the expression of cellular factors PREB and PLA2G4C, which play an important role in virus replication.
Mishchenko EL, Makarova AA, Antropova EA, Venzel AS, Ivanisenko TV, Demenkov PS, Ivanisenko VA. Mishchenko EL, et al. Among authors: venzel as. Vavilovskii Zhurnal Genet Selektsii. 2023 Dec;27(7):776-783. doi: 10.18699/VJGB-23-90. Vavilovskii Zhurnal Genet Selektsii. 2023. PMID: 38213698 Free PMC article.
Prioritization of potential pharmacological targets for the development of anti-hepatocarcinoma drugs modulating the extrinsic apoptosis pathway: the reconstruction and analysis of associative gene networks help.
Demenkov PS, Antropova EA, Adamovskaya AV, Mishchenko EL, Khlebodarova TM, Ivanisenko TV, Ivanisenko NV, Venzel AS, Lavrik IN, Ivanisenko VA. Demenkov PS, et al. Among authors: venzel as. Vavilovskii Zhurnal Genet Selektsii. 2023 Dec;27(7):784-793. doi: 10.18699/VJGB-23-91. Vavilovskii Zhurnal Genet Selektsii. 2023. PMID: 38213696 Free PMC article.