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The Gene Ontology resource: enriching a GOld mine.
Gene Ontology Consortium. Gene Ontology Consortium. Nucleic Acids Res. 2021 Jan 8;49(D1):D325-D334. doi: 10.1093/nar/gkaa1113. Nucleic Acids Res. 2021. PMID: 33290552 Free PMC article.
Enzyme annotation in UniProtKB using Rhea.
Morgat A, Lombardot T, Coudert E, Axelsen K, Neto TB, Gehant S, Bansal P, Bolleman J, Gasteiger E, de Castro E, Baratin D, Pozzato M, Xenarios I, Poux S, Redaschi N, Bridge A; UniProt Consortium. Morgat A, et al. Bioinformatics. 2020 Mar 1;36(6):1896-1901. doi: 10.1093/bioinformatics/btz817. Bioinformatics. 2020. PMID: 31688925 Free PMC article.
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0.
Deutsch EW, Lane L, Overall CM, Bandeira N, Baker MS, Pineau C, Moritz RL, Corrales F, Orchard S, Van Eyk JE, Paik YK, Weintraub ST, Vandenbrouck Y, Omenn GS. Deutsch EW, et al. J Proteome Res. 2019 Dec 6;18(12):4108-4116. doi: 10.1021/acs.jproteome.9b00542. Epub 2019 Oct 21. J Proteome Res. 2019. PMID: 31599596 Free PMC article.
FAIR adoption, assessment and challenges at UniProt.
Garcia L, Bolleman J, Gehant S, Redaschi N, Martin M; UniProt Consortium. Garcia L, et al. Sci Data. 2019 Sep 20;6(1):175. doi: 10.1038/s41597-019-0180-9. Sci Data. 2019. PMID: 31541106 Free PMC article.
Proteomics Standards Initiative Extended FASTA Format.
Binz PA, Shofstahl J, Vizcaíno JA, Barsnes H, Chalkley RJ, Menschaert G, Alpi E, Clauser K, Eng JK, Lane L, Seymour SL, Sánchez LFH, Mayer G, Eisenacher M, Perez-Riverol Y, Kapp EA, Mendoza L, Baker PR, Collins A, Van Den Bossche T, Deutsch EW. Binz PA, et al. J Proteome Res. 2019 Jun 7;18(6):2686-2692. doi: 10.1021/acs.jproteome.9b00064. Epub 2019 May 23. J Proteome Res. 2019. PMID: 31081335 Free PMC article.
Ten quick tips for biocuration.
Tang YA, Pichler K, Füllgrabe A, Lomax J, Malone J, Munoz-Torres MC, Vasant DV, Williams E, Haendel M. Tang YA, et al. PLoS Comput Biol. 2019 May 2;15(5):e1006906. doi: 10.1371/journal.pcbi.1006906. eCollection 2019 May. PLoS Comput Biol. 2019. PMID: 31048830 Free PMC article. No abstract available.
53 results