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BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Shaikh B, Smith LP, Vasilescu D, Marupilla G, Wilson M, Agmon E, Agnew H, Andrews SS, Anwar A, Beber ME, Bergmann FT, Brooks D, Brusch L, Calzone L, Choi K, Cooper J, Detloff J, Drawert B, Dumontier M, Ermentrout GB, Faeder JR, Freiburger AP, Fröhlich F, Funahashi A, Garny A, Gennari JH, Gleeson P, Goelzer A, Haiman Z, Hasenauer J, Hellerstein JL, Hermjakob H, Hoops S, Ison JC, Jahn D, Jakubowski HV, Jordan R, Kalaš M, König M, Liebermeister W, Sheriff RSM, Mandal S, McDougal R, Medley JK, Mendes P, Müller R, Myers CJ, Naldi A, Nguyen TVN, Nickerson DP, Olivier BG, Patoliya D, Paulevé L, Petzold LR, Priya A, Rampadarath AK, Rohwer JM, Saglam AS, Singh D, Sinha A, Snoep J, Sorby H, Spangler R, Starruß J, Thomas PJ, van Niekerk D, Weindl D, Zhang F, Zhukova A, Goldberg AP, Schaff JC, Blinov ML, Sauro HM, Moraru II, Karr JR. Shaikh B, et al. Among authors: rohwer jm. Nucleic Acids Res. 2022 Jul 5;50(W1):W108-W114. doi: 10.1093/nar/gkac331. Nucleic Acids Res. 2022. PMID: 35524558 Free PMC article.
ECA: control in ecosystems.
Westerhoff HV, Getz WM, Bruggeman F, Hofmeyr JH, Rohwer JM, Snoep JL. Westerhoff HV, et al. Among authors: rohwer jm. Mol Biol Rep. 2002;29(1-2):113-7. doi: 10.1023/a:1020396906319. Mol Biol Rep. 2002. PMID: 12241039
Modelling cellular processes with Python and Scipy.
Olivier BG, Rohwer JM, Hofmeyr JH. Olivier BG, et al. Among authors: rohwer jm. Mol Biol Rep. 2002;29(1-2):249-54. doi: 10.1023/a:1020346417223. Mol Biol Rep. 2002. PMID: 12241066
Modelling cellular systems with PySCeS.
Olivier BG, Rohwer JM, Hofmeyr JH. Olivier BG, et al. Among authors: rohwer jm. Bioinformatics. 2005 Feb 15;21(4):560-1. doi: 10.1093/bioinformatics/bti046. Epub 2004 Sep 28. Bioinformatics. 2005. PMID: 15454409
72 results