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Metagenomic analysis of individual mosquito viromes reveals the geographical patterns and drivers of viral diversity.
Pan YF, Zhao H, Gou QY, Shi PB, Tian JH, Feng Y, Li K, Yang WH, Wu D, Tang G, Zhang B, Ren Z, Peng S, Luo GY, Le SJ, Xin GY, Wang J, Hou X, Peng MW, Kong JB, Chen XX, Yang CH, Mei SQ, Liao YQ, Cheng JX, Wang J, Chaolemen, Wu YH, Wang JB, An T, Huang X, Eden JS, Li J, Guo D, Liang G, Jin X, Holmes EC, Li B, Wang D, Li J, Wu WC, Shi M. Pan YF, et al. Among authors: li j, li k, li b. Nat Ecol Evol. 2024 May;8(5):947-959. doi: 10.1038/s41559-024-02365-0. Epub 2024 Mar 22. Nat Ecol Evol. 2024. PMID: 38519631
Cell-free DNA as a diagnostic tool for human echinococcosis.
Zhao Y, Shen S, Jin X, Wang W, Li J, Chen W. Zhao Y, et al. Among authors: li j. Trends Parasitol. 2021 Nov;37(11):943-946. doi: 10.1016/j.pt.2021.07.006. Epub 2021 Jul 29. Trends Parasitol. 2021. PMID: 34334318
Metagenomic analysis of individual mosquitos reveals the ecology of insect viruses.
Pan YF, Zhao H, Gou QY, Shi PB, Tian JH, Feng Y, Li K, Yang WH, Wu D, Tang G, Zhang B, Ren Z, Peng S, Luo GY, Le SJ, Xin GY, Wang J, Hou X, Peng MW, Kong JB, Chen XX, Yang CH, Mei SQ, Liao YQ, Cheng JX, Wang J, Chaolemen, Wu YH, Wang JB, An T, Huang X, Eden JS, Li J, Guo D, Liang G, Jin X, Holmes EC, Li B, Wang D, Li J, Wu WC, Shi M. Pan YF, et al. Among authors: li j, li k, li b. bioRxiv [Preprint]. 2023 Sep 5:2023.08.28.555221. doi: 10.1101/2023.08.28.555221. bioRxiv. 2023. PMID: 37732272 Free PMC article. Preprint.
Substantial viral diversity in bats and rodents from East Africa: insights into evolution, recombination, and cocirculation.
Wang D, Yang X, Ren Z, Hu B, Zhao H, Yang K, Shi P, Zhang Z, Feng Q, Nawenja CV, Obanda V, Robert K, Nalikka B, Waruhiu CN, Ochola GO, Onyuok SO, Ochieng H, Li B, Zhu Y, Si H, Yin J, Kristiansen K, Jin X, Xu X, Xiao M, Agwanda B, Ommeh S, Li J, Shi ZL. Wang D, et al. Among authors: li j, li b. Microbiome. 2024 Apr 10;12(1):72. doi: 10.1186/s40168-024-01782-4. Microbiome. 2024. PMID: 38600530 Free PMC article.
A naturally isolated symbiotic bacterium suppresses flavivirus transmission by Aedes mosquitoes.
Zhang L, Wang D, Shi P, Li J, Niu J, Chen J, Wang G, Wu L, Chen L, Yang Z, Li S, Meng J, Ruan F, He Y, Zhao H, Ren Z, Wang Y, Liu Y, Shi X, Wang Y, Liu Q, Li J, Wang P, Wang J, Zhu Y, Cheng G. Zhang L, et al. Among authors: li s, li j. Science. 2024 Apr 19;384(6693):eadn9524. doi: 10.1126/science.adn9524. Epub 2024 Apr 19. Science. 2024. PMID: 38669573
A human gut microbial gene catalogue established by metagenomic sequencing.
Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T, Mende DR, Li J, Xu J, Li S, Li D, Cao J, Wang B, Liang H, Zheng H, Xie Y, Tap J, Lepage P, Bertalan M, Batto JM, Hansen T, Le Paslier D, Linneberg A, Nielsen HB, Pelletier E, Renault P, Sicheritz-Ponten T, Turner K, Zhu H, Yu C, Li S, Jian M, Zhou Y, Li Y, Zhang X, Li S, Qin N, Yang H, Wang J, Brunak S, Doré J, Guarner F, Kristiansen K, Pedersen O, Parkhill J, Weissenbach J; MetaHIT Consortium; Bork P, Ehrlich SD, Wang J. Qin J, et al. Among authors: li s, li d, li y, li j, li r. Nature. 2010 Mar 4;464(7285):59-65. doi: 10.1038/nature08821. Nature. 2010. PMID: 20203603 Free PMC article.
A metagenome-wide association study of gut microbiota in type 2 diabetes.
Qin J, Li Y, Cai Z, Li S, Zhu J, Zhang F, Liang S, Zhang W, Guan Y, Shen D, Peng Y, Zhang D, Jie Z, Wu W, Qin Y, Xue W, Li J, Han L, Lu D, Wu P, Dai Y, Sun X, Li Z, Tang A, Zhong S, Li X, Chen W, Xu R, Wang M, Feng Q, Gong M, Yu J, Zhang Y, Zhang M, Hansen T, Sanchez G, Raes J, Falony G, Okuda S, Almeida M, LeChatelier E, Renault P, Pons N, Batto JM, Zhang Z, Chen H, Yang R, Zheng W, Li S, Yang H, Wang J, Ehrlich SD, Nielsen R, Pedersen O, Kristiansen K, Wang J. Qin J, et al. Among authors: li s, li y, li j, li z, li x. Nature. 2012 Oct 4;490(7418):55-60. doi: 10.1038/nature11450. Epub 2012 Sep 26. Nature. 2012. PMID: 23023125
Population Bottlenecks and Intra-host Evolution During Human-to-Human Transmission of SARS-CoV-2.
Wang D, Wang Y, Sun W, Zhang L, Ji J, Zhang Z, Cheng X, Li Y, Xiao F, Zhu A, Zhong B, Ruan S, Li J, Ren P, Ou Z, Xiao M, Li M, Deng Z, Zhong H, Li F, Wang WJ, Zhang Y, Chen W, Zhu S, Xu X, Jin X, Zhao J, Zhong N, Zhang W, Zhao J, Li J, Xu Y. Wang D, et al. Among authors: li f, li y, li j, li m. Front Med (Lausanne). 2021 Feb 15;8:585358. doi: 10.3389/fmed.2021.585358. eCollection 2021. Front Med (Lausanne). 2021. PMID: 33659260 Free PMC article.
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