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AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence.
Feldgarden M, Brover V, Gonzalez-Escalona N, Frye JG, Haendiges J, Haft DH, Hoffmann M, Pettengill JB, Prasad AB, Tillman GE, Tyson GH, Klimke W. Feldgarden M, et al. Among authors: klimke w. Sci Rep. 2021 Jun 16;11(1):12728. doi: 10.1038/s41598-021-91456-0. Sci Rep. 2021. PMID: 34135355 Free PMC article.
Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates.
Feldgarden M, Brover V, Haft DH, Prasad AB, Slotta DJ, Tolstoy I, Tyson GH, Zhao S, Hsu CH, McDermott PF, Tadesse DA, Morales C, Simmons M, Tillman G, Wasilenko J, Folster JP, Klimke W. Feldgarden M, et al. Among authors: klimke w. Antimicrob Agents Chemother. 2019 Oct 22;63(11):e00483-19. doi: 10.1128/AAC.00483-19. Print 2019 Nov. Antimicrob Agents Chemother. 2019. PMID: 31427293 Free PMC article.
Erratum for Feldgarden et al., "Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates".
Feldgarden M, Brover V, Haft DH, Prasad AB, Slotta DJ, Tolstoy I, Tyson GH, Zhao S, Hsu CH, McDermott PF, Tadesse DA, Morales C, Simmons M, Tillman G, Wasilenko J, Folster JP, Klimke W. Feldgarden M, et al. Among authors: klimke w. Antimicrob Agents Chemother. 2020 Mar 24;64(4):e00361-20. doi: 10.1128/AAC.00361-20. Print 2020 Mar 24. Antimicrob Agents Chemother. 2020. PMID: 32209564 Free PMC article. No abstract available.
Proposal for assignment of allele numbers for mobile colistin resistance (mcr) genes.
Partridge SR, Di Pilato V, Doi Y, Feldgarden M, Haft DH, Klimke W, Kumar-Singh S, Liu JH, Malhotra-Kumar S, Prasad A, Rossolini GM, Schwarz S, Shen J, Walsh T, Wang Y, Xavier BB. Partridge SR, et al. Among authors: klimke w. J Antimicrob Chemother. 2018 Oct 1;73(10):2625-2630. doi: 10.1093/jac/dky262. J Antimicrob Chemother. 2018. PMID: 30053115 Free PMC article.
A Standard Numbering Scheme for Class C β-Lactamases.
Mack AR, Barnes MD, Taracila MA, Hujer AM, Hujer KM, Cabot G, Feldgarden M, Haft DH, Klimke W, van den Akker F, Vila AJ, Smania A, Haider S, Papp-Wallace KM, Bradford PA, Rossolini GM, Docquier JD, Frère JM, Galleni M, Hanson ND, Oliver A, Plésiat P, Poirel L, Nordmann P, Palzkill TG, Jacoby GA, Bush K, Bonomo RA. Mack AR, et al. Among authors: klimke w. Antimicrob Agents Chemother. 2020 Feb 21;64(3):e01841-19. doi: 10.1128/AAC.01841-19. Print 2020 Feb 21. Antimicrob Agents Chemother. 2020. PMID: 31712217 Free PMC article.
Use of Whole Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
Stevens EL, Carleton HA, Beal J, Tillman GE, Lindsey RL, Lauer AC, Pightling A, Jarvis KG, Ottesen A, Ramachandran P, Hintz L, Katz LS, Folster JP, Whichard JM, Trees E, Timme RE, McDERMOTT P, Wolpert B, Bazaco M, Zhao S, Lindley S, Bruce BB, Griffin PM, Brown E, Allard M, Tallent S, Irvin K, Hoffmann M, Wise M, Tauxe R, Gerner-Smidt P, Simmons M, Kissler B, Defibaugh-Chavez S, Klimke W, Agarwala R, Lindsay J, Cook K, Austerman SR, Goldman D, McGARRY S, Hale KR, Dessai U, Musser SM, Braden C. Stevens EL, et al. Among authors: klimke w. J Food Prot. 2022 May 1;85(5):755-772. doi: 10.4315/JFP-21-437. J Food Prot. 2022. PMID: 35259246 Free article. Review.
Comment on: Resistance gene naming and numbering: is it a new gene or not?
Jacoby GA, Bonomo RA, Bradford PA, Bush K, Doi Y, Feldgarden M, Haft D, Klimke W, Nordmann P, Palzkill T, Poirel L, Prasad A, Rossolini GM, Walsh T. Jacoby GA, et al. Among authors: klimke w. J Antimicrob Chemother. 2016 Sep;71(9):2677-8. doi: 10.1093/jac/dkw204. Epub 2016 Jun 3. J Antimicrob Chemother. 2016. PMID: 27261266 Free PMC article. No abstract available.
Consensus on β-Lactamase Nomenclature.
Bradford PA, Bonomo RA, Bush K, Carattoli A, Feldgarden M, Haft DH, Ishii Y, Jacoby GA, Klimke W, Palzkill T, Poirel L, Rossolini GM, Tamma PD, Arias CA. Bradford PA, et al. Among authors: klimke w. Antimicrob Agents Chemother. 2022 Apr 19;66(4):e0033322. doi: 10.1128/aac.00333-22. Epub 2022 Apr 5. Antimicrob Agents Chemother. 2022. PMID: 35380458 Free PMC article.
38 results