Kavraki LE - Search Results

1

Native State of Complement Protein C3d Analysed via Hydrogen Exchange and Conformational Sampling.

Devaurs D, Papanastasiou M, Antunes DA, Abella JR, Moll M, Ricklin D, Lambris JD, Kavraki LE. Devaurs D, et al. Among authors: kavraki le. Int J Comput Biol Drug Des. 2018;11(1-2):90-113. doi: 10.1504/IJCBDD.2018.090834. Epub 2018 Mar 24. Int J Comput Biol Drug Des. 2018. PMID: 30700993 Free PMC article.

2

Low-dimensional, free-energy landscapes of protein-folding reactions by nonlinear dimensionality reduction.

Das P, Moll M, Stamati H, Kavraki LE, Clementi C. Das P, et al. Among authors: kavraki le. Proc Natl Acad Sci U S A. 2006 Jun 27;103(26):9885-90. doi: 10.1073/pnas.0603553103. Epub 2006 Jun 19. Proc Natl Acad Sci U S A. 2006. PMID: 16785435 Free PMC article.

3

Roadmap methods for protein folding.

Moll M, Schwarz D, Kavraki LE. Moll M, et al. Among authors: kavraki le. Methods Mol Biol. 2008;413:219-39. doi: 10.1007/978-1-59745-574-9_9. Methods Mol Biol. 2008. PMID: 18075168 Review.

4

Electrostatic contributions drive the interaction between Staphylococcus aureus protein Efb-C and its complement target C3d.

Haspel N, Ricklin D, Geisbrecht BV, Kavraki LE, Lambris JD. Haspel N, et al. Among authors: kavraki le. Protein Sci. 2008 Nov;17(11):1894-906. doi: 10.1110/ps.036624.108. Epub 2008 Aug 7. Protein Sci. 2008. PMID: 18687868 Free PMC article.

5

Matching of structural motifs using hashing on residue labels and geometric filtering for protein function prediction.

Moll M, Kavraki LE. Moll M, et al. Among authors: kavraki le. Comput Syst Bioinformatics Conf. 2008;7:157-68. Comput Syst Bioinformatics Conf. 2008. PMID: 19642277 Free article.

6

Multi-scale characterization of the energy landscape of proteins with application to the C3D/Efb-C complex.

Haspel N, Geisbrecht BV, Lambris J, Kavraki L. Haspel N, et al. Proteins. 2010 Mar;78(4):1004-14. doi: 10.1002/prot.22624. Proteins. 2010. PMID: 19899169 Free PMC article.

7

Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction.

Bryant DH, Moll M, Chen BY, Fofanov VY, Kavraki LE. Bryant DH, et al. Among authors: kavraki le. BMC Bioinformatics. 2010 May 11;11:242. doi: 10.1186/1471-2105-11-242. BMC Bioinformatics. 2010. PMID: 20459833 Free PMC article.

8

Tracing conformational changes in proteins.

Haspel N, Moll M, Baker ML, Chiu W, Kavraki LE. Haspel N, et al. Among authors: kavraki le. BMC Struct Biol. 2010 May 17;10 Suppl 1(Suppl 1):S1. doi: 10.1186/1472-6807-10-S1-S1. BMC Struct Biol. 2010. PMID: 20487508 Free PMC article.

9

The LabelHash algorithm for substructure matching.

Moll M, Bryant DH, Kavraki LE. Moll M, et al. Among authors: kavraki le. BMC Bioinformatics. 2010 Nov 11;11:555. doi: 10.1186/1471-2105-11-555. BMC Bioinformatics. 2010. PMID: 21070651 Free PMC article.

10

The LabelHash server and tools for substructure-based functional annotation.

Moll M, Bryant DH, Kavraki LE. Moll M, et al. Among authors: kavraki le. Bioinformatics. 2011 Aug 1;27(15):2161-2. doi: 10.1093/bioinformatics/btr343. Epub 2011 Jun 8. Bioinformatics. 2011. PMID: 21659320

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