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Complete Combinatorial Mutational Enumeration of a protein functional site enables sequence-landscape mapping and identifies highly-mutated variants that retain activity.
Colom MS, Vucinic J, Adolf-Bryfogle J, Bowman JW, Verel S, Moczygemba I, Schiex T, Simoncini D, Bahl CD. Colom MS, et al. Among authors: vucinic j. Res Sq [Preprint]. 2023 Sep 11:rs.3.rs-2248327. doi: 10.21203/rs.3.rs-2248327/v1. Res Sq. 2023. PMID: 36482980 Free PMC article. Preprint.
Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
Yagi S, Padhi AK, Vucinic J, Barbe S, Schiex T, Nakagawa R, Simoncini D, Zhang KYJ, Tagami S. Yagi S, et al. Among authors: vucinic j. J Am Chem Soc. 2021 Oct 6;143(39):15998-16006. doi: 10.1021/jacs.1c05367. Epub 2021 Sep 24. J Am Chem Soc. 2021. PMID: 34559526
Positive multistate protein design.
Vucinic J, Simoncini D, Ruffini M, Barbe S, Schiex T. Vucinic J, et al. Bioinformatics. 2020 Jan 1;36(1):122-130. doi: 10.1093/bioinformatics/btz497. Bioinformatics. 2020. PMID: 31199465 Free article.