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Programmed DNA Elimination in Vertebrates.
Smith JJ, Timoshevskiy VA, Saraceno C. Smith JJ, et al. Annu Rev Anim Biosci. 2021 Feb 16;9:173-201. doi: 10.1146/annurev-animal-061220-023220. Epub 2020 Sep 28. Annu Rev Anim Biosci. 2021. PMID: 32986476 Free PMC article. Review.
The hagfish genome and the evolution of vertebrates.
Marlétaz F, Timoshevskaya N, Timoshevskiy VA, Parey E, Simakov O, Gavriouchkina D, Suzuki M, Kubokawa K, Brenner S, Smith JJ, Rokhsar DS. Marlétaz F, et al. Nature. 2024 Mar;627(8005):811-820. doi: 10.1038/s41586-024-07070-3. Epub 2024 Jan 23. Nature. 2024. PMID: 38262590 Free PMC article.
The hagfish genome and the evolution of vertebrates.
Marlétaz F, Timoshevskaya N, Timoshevskiy V, Simakov O, Parey E, Gavriouchkina D, Suzuki M, Kubokawa K, Brenner S, Smith J, Rokhsar DS. Marlétaz F, et al. bioRxiv [Preprint]. 2023 Apr 18:2023.04.17.537254. doi: 10.1101/2023.04.17.537254. bioRxiv. 2023. PMID: 37131617 Free PMC article. Updated. Preprint.
An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes.
Timoshevskaya N, Eşkut KI, Timoshevskiy VA, Robb SMC, Holt C, Hess JE, Parker HJ, Baker CF, Miller AK, Saraceno C, Yandell M, Krumlauf R, Narum SR, Lampman RT, Gemmell NJ, Mountcastle J, Haase B, Balacco JR, Formenti G, Pelan S, Sims Y, Howe K, Fedrigo O, Jarvis ED, Smith JJ. Timoshevskaya N, et al. Cell Rep. 2023 Mar 28;42(3):112263. doi: 10.1016/j.celrep.2023.112263. Epub 2023 Mar 15. Cell Rep. 2023. PMID: 36930644 Free PMC article.
A genome-wide assessment of the ancestral neural crest gene regulatory network.
Hockman D, Chong-Morrison V, Green SA, Gavriouchkina D, Candido-Ferreira I, Ling ITC, Williams RM, Amemiya CT, Smith JJ, Bronner ME, Sauka-Spengler T. Hockman D, et al. Nat Commun. 2019 Oct 16;10(1):4689. doi: 10.1038/s41467-019-12687-4. Nat Commun. 2019. PMID: 31619682 Free PMC article.
Early satellite cell communication creates a permissive environment for long-term muscle growth.
Murach KA, Peck BD, Policastro RA, Vechetti IJ, Van Pelt DW, Dungan CM, Denes LT, Fu X, Brightwell CR, Zentner GE, Dupont-Versteegden EE, Richards CI, Smith JJ, Fry CS, McCarthy JJ, Peterson CA. Murach KA, et al. iScience. 2021 Mar 29;24(4):102372. doi: 10.1016/j.isci.2021.102372. eCollection 2021 Apr 23. iScience. 2021. PMID: 33948557 Free PMC article.