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Page 1
Critical Assessment of Metagenome Interpretation: the second round of challenges.
Meyer F, Fritz A, Deng ZL, Koslicki D, Lesker TR, Gurevich A, Robertson G, Alser M, Antipov D, Beghini F, Bertrand D, Brito JJ, Brown CT, Buchmann J, Buluç A, Chen B, Chikhi R, Clausen PTLC, Cristian A, Dabrowski PW, Darling AE, Egan R, Eskin E, Georganas E, Goltsman E, Gray MA, Hansen LH, Hofmeyr S, Huang P, Irber L, Jia H, Jørgensen TS, Kieser SD, Klemetsen T, Kola A, Kolmogorov M, Korobeynikov A, Kwan J, LaPierre N, Lemaitre C, Li C, Limasset A, Malcher-Miranda F, Mangul S, Marcelino VR, Marchet C, Marijon P, Meleshko D, Mende DR, Milanese A, Nagarajan N, Nissen J, Nurk S, Oliker L, Paoli L, Peterlongo P, Piro VC, Porter JS, Rasmussen S, Rees ER, Reinert K, Renard B, Robertsen EM, Rosen GL, Ruscheweyh HJ, Sarwal V, Segata N, Seiler E, Shi L, Sun F, Sunagawa S, Sørensen SJ, Thomas A, Tong C, Trajkovski M, Tremblay J, Uritskiy G, Vicedomini R, Wang Z, Wang Z, Wang Z, Warren A, Willassen NP, Yelick K, You R, Zeller G, Zhao Z, Zhu S, Zhu J, Garrido-Oter R, Gastmeier P, Hacquard S, Häußler S, Khaledi A, Maechler F, Mesny F, Radutoiu S, Schulze-Lefert P, Smit N, Strowig T, Bremges A, Sczyrba A, McHardy AC. Meyer F, et al. Among authors: jorgensen ts. Nat Methods. 2022 Apr;19(4):429-440. doi: 10.1038/s41592-022-01431-4. Epub 2022 Apr 8. Nat Methods. 2022. PMID: 35396482 Free PMC article.
Embryogenesis of a calanoid copepod analyzed by transcriptomics.
Acebal MC, Dalgaard LT, Jørgensen TS, Hansen BW. Acebal MC, et al. Among authors: jorgensen ts. Comp Biochem Physiol Part D Genomics Proteomics. 2023 Mar;45:101054. doi: 10.1016/j.cbd.2022.101054. Epub 2022 Dec 12. Comp Biochem Physiol Part D Genomics Proteomics. 2023. PMID: 36565589 Free article.
Crossiellidines A-F, Unprecedented Pyrazine-Alkylguanidine Metabolites with Broad-Spectrum Antibacterial Activity from Crossiella sp.
Ortiz-López FJ, Oves-Costales D, Carretero-Molina D, Martín J, Díaz C, de la Cruz M, Román-Hurtado F, Álvarez-Arévalo M, Jørgensen TS, Reyes F, Weber T, Genilloud O. Ortiz-López FJ, et al. Among authors: jorgensen ts. Org Lett. 2023 May 19;25(19):3502-3507. doi: 10.1021/acs.orglett.3c01088. Epub 2023 May 10. Org Lett. 2023. PMID: 37162500
Complete, circular genome sequence of a Bosea sp. isolate from soil.
Alvarez-Arevalo M, Sterndorff EB, Faurdal D, Mourched AS, Charusanti P, Jørgensen TS, Weber T. Alvarez-Arevalo M, et al. Among authors: jorgensen ts. Microbiol Resour Announc. 2023 Sep 19;12(9):e0036023. doi: 10.1128/MRA.00360-23. Epub 2023 Aug 21. Microbiol Resour Announc. 2023. PMID: 37607062 Free PMC article.
A Versatile in Vivo DNA Assembly Toolbox for Fungal Strain Engineering.
Jarczynska ZD, Garcia Vanegas K, Deichmann M, Nørskov Jensen C, Scheeper MJ, Futyma ME, Strucko T, Jares Contesini F, Sparholt Jørgensen T, Blæsbjerg Hoof J, Hasbro Mortensen U. Jarczynska ZD, et al. Among authors: sparholt jorgensen t. ACS Synth Biol. 2022 Oct 21;11(10):3251-3263. doi: 10.1021/acssynbio.2c00159. Epub 2022 Sep 20. ACS Synth Biol. 2022. PMID: 36126183 Free PMC article.
Properties of Multidrug-Resistant Mutants Derived from Heterologous Expression Chassis Strain Streptomyces albidoflavus J1074.
Dolya B, Hryhorieva O, Sorochynska K, Lopatniuk M, Ostash I, Tseduliak VM, Sterndorff EB, Jørgensen TS, Gren T, Dacyuk Y, Weber T, Luzhetskyy A, Fedorenko V, Ostash B. Dolya B, et al. Among authors: jorgensen ts. Microorganisms. 2023 Apr 30;11(5):1176. doi: 10.3390/microorganisms11051176. Microorganisms. 2023. PMID: 37317150 Free PMC article.
Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC. Sczyrba A, et al. Among authors: jorgensen ts. Nat Methods. 2017 Nov;14(11):1063-1071. doi: 10.1038/nmeth.4458. Epub 2017 Oct 2. Nat Methods. 2017. PMID: 28967888 Free PMC article.
22 results