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Year | Number of Results |
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2022 | 3 |
2023 | 4 |
2024 | 0 |
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Page 1
Towards a better understanding of TF-DNA binding prediction from genomic features.
Comput Biol Med. 2022 Oct;149:105993. doi: 10.1016/j.compbiomed.2022.105993. Epub 2022 Aug 17.
Comput Biol Med. 2022.
PMID: 36057196
Review.
Uncovering the Relationship between Tissue-Specific TF-DNA Binding and Chromatin Features through a Transformer-Based Model.
Zhang Y, Liu Y, Wang Z, Wang M, Xiong S, Huang G, Gong M.
Zhang Y, et al. Among authors: xiong s.
Genes (Basel). 2022 Oct 26;13(11):1952. doi: 10.3390/genes13111952.
Genes (Basel). 2022.
PMID: 36360189
Free PMC article.
Item in Clipboard
A novel convolution attention model for predicting transcription factor binding sites by combination of sequence and shape.
Zhang Y, Wang Z, Zeng Y, Liu Y, Xiong S, Wang M, Zhou J, Zou Q.
Zhang Y, et al. Among authors: xiong s.
Brief Bioinform. 2022 Jan 17;23(1):bbab525. doi: 10.1093/bib/bbab525.
Brief Bioinform. 2022.
PMID: 34929739
Item in Clipboard
Local augmented graph neural network for multi-omics cancer prognosis prediction and analysis.
Zhang Y, Xiong S, Wang Z, Liu Y, Luo H, Li B, Zou Q.
Zhang Y, et al. Among authors: xiong s.
Methods. 2023 May;213:1-9. doi: 10.1016/j.ymeth.2023.02.011. Epub 2023 Mar 16.
Methods. 2023.
PMID: 36933628
Item in Clipboard
MetaSEM: Gene Regulatory Network Inference from Single-Cell RNA Data by Meta-Learning.
Zhang Y, Wang M, Wang Z, Liu Y, Xiong S, Zou Q.
Zhang Y, et al. Among authors: xiong s.
Int J Mol Sci. 2023 Jan 30;24(3):2595. doi: 10.3390/ijms24032595.
Int J Mol Sci. 2023.
PMID: 36768917
Free PMC article.
Item in Clipboard
Multiple sequence alignment based on deep reinforcement learning with self-attention and positional encoding.
Liu Y, Yuan H, Zhang Q, Wang Z, Xiong S, Wen N, Zhang Y.
Liu Y, et al. Among authors: xiong s.
Bioinformatics. 2023 Nov 1;39(11):btad636. doi: 10.1093/bioinformatics/btad636.
Bioinformatics. 2023.
PMID: 37856335
Free PMC article.
Item in Clipboard
HAMPLE: deciphering TF-DNA binding mechanism in different cellular environments by characterizing higher-order nucleotide dependency.
Wang Z, Xiong S, Yu Y, Zhou J, Zhang Y.
Wang Z, et al. Among authors: xiong s.
Bioinformatics. 2023 May 4;39(5):btad299. doi: 10.1093/bioinformatics/btad299.
Bioinformatics. 2023.
PMID: 37140548
Free PMC article.
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