Mikut R - Search Results

1

GPU-accelerated ray-casting for 3D fiber orientation analysis.

Shkarin R, Shkarina S, Weinhardt V, Surmenev RA, Surmeneva MA, Shkarin A, Baumbach T, Mikut R. Shkarin R, et al. Among authors: mikut r. PLoS One. 2020 Jul 29;15(7):e0236420. doi: 10.1371/journal.pone.0236420. eCollection 2020. PLoS One. 2020. PMID: 32726324 Free PMC article.

2

Fast segmentation of stained nuclei in terabyte-scale, time resolved 3D microscopy image stacks.

Stegmaier J, Otte JC, Kobitski A, Bartschat A, Garcia A, Nienhaus GU, Strähle U, Mikut R. Stegmaier J, et al. Among authors: mikut r. PLoS One. 2014 Feb 27;9(2):e90036. doi: 10.1371/journal.pone.0090036. eCollection 2014. PLoS One. 2014. PMID: 24587204 Free PMC article.

3

Quanfima: An open source Python package for automated fiber analysis of biomaterials.

Shkarin R, Shkarin A, Shkarina S, Cecilia A, Surmenev RA, Surmeneva MA, Weinhardt V, Baumbach T, Mikut R. Shkarin R, et al. Among authors: mikut r. PLoS One. 2019 Apr 11;14(4):e0215137. doi: 10.1371/journal.pone.0215137. eCollection 2019. PLoS One. 2019. PMID: 30973910 Free PMC article.

4

XPIWIT--an XML pipeline wrapper for the Insight Toolkit.

Bartschat A, Hübner E, Reischl M, Mikut R, Stegmaier J. Bartschat A, et al. Among authors: mikut r. Bioinformatics. 2016 Jan 15;32(2):315-7. doi: 10.1093/bioinformatics/btv559. Epub 2015 Sep 28. Bioinformatics. 2016. PMID: 26415725

5

Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos.

Stegmaier J, Amat F, Lemon WC, McDole K, Wan Y, Teodoro G, Mikut R, Keller PJ. Stegmaier J, et al. Among authors: mikut r. Dev Cell. 2016 Jan 25;36(2):225-40. doi: 10.1016/j.devcel.2015.12.028. Dev Cell. 2016. PMID: 26812020 Free article.

6

A New Feedback-Based Method for Parameter Adaptation in Image Processing Routines.

Khan AU, Mikut R, Reischl M. Khan AU, et al. Among authors: mikut r. PLoS One. 2016 Oct 20;11(10):e0165180. doi: 10.1371/journal.pone.0165180. eCollection 2016. PLoS One. 2016. PMID: 27764213 Free PMC article.

7

Fuzzy-based propagation of prior knowledge to improve large-scale image analysis pipelines.

Stegmaier J, Mikut R. Stegmaier J, et al. Among authors: mikut r. PLoS One. 2017 Nov 2;12(11):e0187535. doi: 10.1371/journal.pone.0187535. eCollection 2017. PLoS One. 2017. PMID: 29095927 Free PMC article.

8

3D confocal laser-scanning microscopy for large-area imaging of the corneal subbasal nerve plexus.

Allgeier S, Bartschat A, Bohn S, Peschel S, Reichert KM, Sperlich K, Walckling M, Hagenmeyer V, Mikut R, Stachs O, Köhler B. Allgeier S, et al. Among authors: mikut r. Sci Rep. 2018 May 10;8(1):7468. doi: 10.1038/s41598-018-25915-6. Sci Rep. 2018. PMID: 29749384 Free PMC article.

9

BeadNet: deep learning-based bead detection and counting in low-resolution microscopy images.

Scherr T, Streule K, Bartschat A, Böhland M, Stegmaier J, Reischl M, Orian-Rousseau V, Mikut R. Scherr T, et al. Among authors: mikut r. Bioinformatics. 2020 Nov 1;36(17):4668-4670. doi: 10.1093/bioinformatics/btaa594. Bioinformatics. 2020. PMID: 32589734 Free PMC article.

10

Cell segmentation and tracking using CNN-based distance predictions and a graph-based matching strategy.

Scherr T, Löffler K, Böhland M, Mikut R. Scherr T, et al. Among authors: mikut r. PLoS One. 2020 Dec 8;15(12):e0243219. doi: 10.1371/journal.pone.0243219. eCollection 2020. PLoS One. 2020. PMID: 33290432 Free PMC article.

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