Dubchak I - Search Results

1

Complete Genome Sequence of a Virulent African Swine Fever Virus from a Domestic Pig in Ukraine.

Kovalenko G, Ducluzeau AL, Ishchenko L, Sushko M, Sapachova M, Rudova N, Solodiankin O, Gerilovych A, Dagdag R, Redlinger M, Bezymennyi M, Frant M, Lange CE, Dubchak I, Mezhenskyi AA, Nychyk S, Bortz E, Drown DM. Kovalenko G, et al. Among authors: dubchak i. Microbiol Resour Announc. 2019 Oct 17;8(42):e00883-19. doi: 10.1128/MRA.00883-19. Microbiol Resour Announc. 2019. PMID: 31624164 Free PMC article.

2

Obtaining comparative genomic data with the VISTA family of computational tools.

Ratnere I, Dubchak I. Ratnere I, et al. Among authors: dubchak i. Curr Protoc Bioinformatics. 2009 Jun;Chapter 10:10.6.1-10.6.17. doi: 10.1002/0471250953.bi1006s26. Curr Protoc Bioinformatics. 2009. PMID: 19496056

3

Multiple whole-genome alignments without a reference organism.

Dubchak I, Poliakov A, Kislyuk A, Brudno M. Dubchak I, et al. Genome Res. 2009 Apr;19(4):682-9. doi: 10.1101/gr.081778.108. Epub 2009 Jan 28. Genome Res. 2009. PMID: 19176791 Free PMC article.

4

A new family of transcriptional regulators of tungstoenzymes and molybdate/tungstate transport.

Rajeev L, Garber ME, Zane GM, Price MN, Dubchak I, Wall JD, Novichkov PS, Mukhopadhyay A, Kazakov AE. Rajeev L, et al. Among authors: dubchak i. Environ Microbiol. 2019 Feb;21(2):784-799. doi: 10.1111/1462-2920.14500. Epub 2019 Jan 16. Environ Microbiol. 2019. PMID: 30536693

5

Strategies and tools for whole-genome alignments.

Couronne O, Poliakov A, Bray N, Ishkhanov T, Ryaboy D, Rubin E, Pachter L, Dubchak I. Couronne O, et al. Among authors: dubchak i. Genome Res. 2003 Jan;13(1):73-80. doi: 10.1101/gr.762503. Genome Res. 2003. PMID: 12529308 Free PMC article.

6

Multiple whole genome alignments and novel biomedical applications at the VISTA portal.

Brudno M, Poliakov A, Minovitsky S, Ratnere I, Dubchak I. Brudno M, et al. Among authors: dubchak i. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W669-74. doi: 10.1093/nar/gkm279. Epub 2007 May 8. Nucleic Acids Res. 2007. PMID: 17488840 Free PMC article.

7

ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes.

Novichkov PS, Ratnere I, Wolf YI, Koonin EV, Dubchak I. Novichkov PS, et al. Among authors: dubchak i. Nucleic Acids Res. 2009 Jan;37(Database issue):D448-54. doi: 10.1093/nar/gkn684. Epub 2008 Oct 9. Nucleic Acids Res. 2009. PMID: 18845571 Free PMC article.

8

The genome portal of the Department of Energy Joint Genome Institute.

Grigoriev IV, Nordberg H, Shabalov I, Aerts A, Cantor M, Goodstein D, Kuo A, Minovitsky S, Nikitin R, Ohm RA, Otillar R, Poliakov A, Ratnere I, Riley R, Smirnova T, Rokhsar D, Dubchak I. Grigoriev IV, et al. Among authors: dubchak i. Nucleic Acids Res. 2012 Jan;40(Database issue):D26-32. doi: 10.1093/nar/gkr947. Epub 2011 Nov 22. Nucleic Acids Res. 2012. PMID: 22110030 Free PMC article.

9

VISTA Region Viewer (RViewer)--a computational system for prioritizing genomic intervals for biomedical studies.

Lukashin I, Novichkov P, Boffelli D, Paciorkowski AR, Minovitsky S, Yang S, Dubchak I. Lukashin I, et al. Among authors: dubchak i. Bioinformatics. 2011 Sep 15;27(18):2595-7. doi: 10.1093/bioinformatics/btr440. Epub 2011 Jul 26. Bioinformatics. 2011. PMID: 21791533 Free PMC article.

10

Comparative analysis and visualization of genomic sequences using VISTA browser and associated computational tools.

Dubchak I. Dubchak I. Methods Mol Biol. 2007;395:3-16. doi: 10.1007/978-1-59745-514-5_1. Methods Mol Biol. 2007. PMID: 17993664

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