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Pseudogene repair driven by selection pressure applied in experimental evolution.
Anand A, Olson CA, Yang L, Sastry AV, Catoiu E, Choudhary KS, Phaneuf PV, Sandberg TE, Xu S, Hefner Y, Szubin R, Feist AM, Palsson BO. Anand A, et al. Among authors: phaneuf pv. Nat Microbiol. 2019 Mar;4(3):386-389. doi: 10.1038/s41564-018-0340-2. Epub 2019 Jan 28. Nat Microbiol. 2019. PMID: 30692668
Reframing gene essentiality in terms of adaptive flexibility.
Guzmán GI, Olson CA, Hefner Y, Phaneuf PV, Catoiu E, Crepaldi LB, Micas LG, Palsson BO, Feist AM. Guzmán GI, et al. Among authors: phaneuf pv. BMC Syst Biol. 2018 Dec 17;12(1):143. doi: 10.1186/s12918-018-0653-z. BMC Syst Biol. 2018. PMID: 30558585 Free PMC article.
The genetic basis for adaptation of model-designed syntrophic co-cultures.
Lloyd CJ, King ZA, Sandberg TE, Hefner Y, Olson CA, Phaneuf PV, O'Brien EJ, Sanders JG, Salido RA, Sanders K, Brennan C, Humphrey G, Knight R, Feist AM. Lloyd CJ, et al. Among authors: phaneuf pv. PLoS Comput Biol. 2019 Mar 1;15(3):e1006213. doi: 10.1371/journal.pcbi.1006213. eCollection 2019 Mar. PLoS Comput Biol. 2019. PMID: 30822347 Free PMC article.
Cellular responses to reactive oxygen species are predicted from molecular mechanisms.
Yang L, Mih N, Anand A, Park JH, Tan J, Yurkovich JT, Monk JM, Lloyd CJ, Sandberg TE, Seo SW, Kim D, Sastry AV, Phaneuf P, Gao Y, Broddrick JT, Chen K, Heckmann D, Szubin R, Hefner Y, Feist AM, Palsson BO. Yang L, et al. Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):14368-14373. doi: 10.1073/pnas.1905039116. Epub 2019 Jul 3. Proc Natl Acad Sci U S A. 2019. PMID: 31270234 Free PMC article.
Adaptive laboratory evolution of Escherichia coli under acid stress.
Du B, Olson CA, Sastry AV, Fang X, Phaneuf PV, Chen K, Wu M, Szubin R, Xu S, Gao Y, Hefner Y, Feist AM, Palsson BO. Du B, et al. Among authors: phaneuf pv. Microbiology (Reading). 2020 Feb;166(2):141-148. doi: 10.1099/mic.0.000867. Epub 2019 Oct 18. Microbiology (Reading). 2020. PMID: 31625833 Free PMC article.
Adaptive evolution reveals a tradeoff between growth rate and oxidative stress during naphthoquinone-based aerobic respiration.
Anand A, Chen K, Yang L, Sastry AV, Olson CA, Poudel S, Seif Y, Hefner Y, Phaneuf PV, Xu S, Szubin R, Feist AM, Palsson BO. Anand A, et al. Among authors: phaneuf pv. Proc Natl Acad Sci U S A. 2019 Dec 10;116(50):25287-25292. doi: 10.1073/pnas.1909987116. Epub 2019 Nov 25. Proc Natl Acad Sci U S A. 2019. PMID: 31767748 Free PMC article.
21 results