Anand A - Search Results

1

Pseudogene repair driven by selection pressure applied in experimental evolution.

Anand A, Olson CA, Yang L, Sastry AV, Catoiu E, Choudhary KS, Phaneuf PV, Sandberg TE, Xu S, Hefner Y, Szubin R, Feist AM, Palsson BO. Anand A, et al. Nat Microbiol. 2019 Mar;4(3):386-389. doi: 10.1038/s41564-018-0340-2. Epub 2019 Jan 28. Nat Microbiol. 2019. PMID: 30692668

2

Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance.

Kavvas ES, Catoiu E, Mih N, Yurkovich JT, Seif Y, Dillon N, Heckmann D, Anand A, Yang L, Nizet V, Monk JM, Palsson BO. Kavvas ES, et al. Among authors: anand a. Nat Commun. 2018 Oct 17;9(1):4306. doi: 10.1038/s41467-018-06634-y. Nat Commun. 2018. PMID: 30333483 Free PMC article.

3

Cellular responses to reactive oxygen species are predicted from molecular mechanisms.

Yang L, Mih N, Anand A, Park JH, Tan J, Yurkovich JT, Monk JM, Lloyd CJ, Sandberg TE, Seo SW, Kim D, Sastry AV, Phaneuf P, Gao Y, Broddrick JT, Chen K, Heckmann D, Szubin R, Hefner Y, Feist AM, Palsson BO. Yang L, et al. Among authors: anand a. Proc Natl Acad Sci U S A. 2019 Jul 9;116(28):14368-14373. doi: 10.1073/pnas.1905039116. Epub 2019 Jul 3. Proc Natl Acad Sci U S A. 2019. PMID: 31270234 Free PMC article.

4

OxyR Is a Convergent Target for Mutations Acquired during Adaptation to Oxidative Stress-Prone Metabolic States.

Anand A, Chen K, Catoiu E, Sastry AV, Olson CA, Sandberg TE, Seif Y, Xu S, Szubin R, Yang L, Feist AM, Palsson BO. Anand A, et al. Mol Biol Evol. 2020 Mar 1;37(3):660-667. doi: 10.1093/molbev/msz251. Mol Biol Evol. 2020. PMID: 31651953 Free PMC article.

5

Adaptive evolution reveals a tradeoff between growth rate and oxidative stress during naphthoquinone-based aerobic respiration.

Anand A, Chen K, Yang L, Sastry AV, Olson CA, Poudel S, Seif Y, Hefner Y, Phaneuf PV, Xu S, Szubin R, Feist AM, Palsson BO. Anand A, et al. Proc Natl Acad Sci U S A. 2019 Dec 10;116(50):25287-25292. doi: 10.1073/pnas.1909987116. Epub 2019 Nov 25. Proc Natl Acad Sci U S A. 2019. PMID: 31767748 Free PMC article.

6

Metabolic and genetic basis for auxotrophies in Gram-negative species.

Seif Y, Choudhary KS, Hefner Y, Anand A, Yang L, Palsson BO. Seif Y, et al. Among authors: anand a. Proc Natl Acad Sci U S A. 2020 Mar 17;117(11):6264-6273. doi: 10.1073/pnas.1910499117. Epub 2020 Mar 4. Proc Natl Acad Sci U S A. 2020. PMID: 32132208 Free PMC article.

7

Revealing 29 sets of independently modulated genes in Staphylococcus aureus, their regulators, and role in key physiological response.

Poudel S, Tsunemoto H, Seif Y, Sastry AV, Szubin R, Xu S, Machado H, Olson CA, Anand A, Pogliano J, Nizet V, Palsson BO. Poudel S, et al. Among authors: anand a. Proc Natl Acad Sci U S A. 2020 Jul 21;117(29):17228-17239. doi: 10.1073/pnas.2008413117. Epub 2020 Jul 2. Proc Natl Acad Sci U S A. 2020. PMID: 32616573 Free PMC article.

8

Bacterial fitness landscapes stratify based on proteome allocation associated with discrete aero-types.

Chen K, Anand A, Olson C, Sandberg TE, Gao Y, Mih N, Palsson BO. Chen K, et al. Among authors: anand a. PLoS Comput Biol. 2021 Jan 19;17(1):e1008596. doi: 10.1371/journal.pcbi.1008596. eCollection 2021 Jan. PLoS Comput Biol. 2021. PMID: 33465077 Free PMC article.

9

Restoration of fitness lost due to dysregulation of the pyruvate dehydrogenase complex is triggered by ribosomal binding site modifications.

Anand A, Olson CA, Sastry AV, Patel A, Szubin R, Yang L, Feist AM, Palsson BO. Anand A, et al. Cell Rep. 2021 Apr 6;35(1):108961. doi: 10.1016/j.celrep.2021.108961. Cell Rep. 2021. PMID: 33826886 Free PMC article.

10

Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus.

Machado H, Seif Y, Sakoulas G, Olson CA, Hefner Y, Anand A, Jones YZ, Szubin R, Palsson BO, Nizet V, Feist AM. Machado H, et al. Among authors: anand a. Commun Biol. 2021 Jun 25;4(1):793. doi: 10.1038/s42003-021-02339-z. Commun Biol. 2021. PMID: 34172889 Free PMC article.

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