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Structural and functional analysis of a novel haloalkane dehalogenase with two halide-binding sites.
Chaloupkova R, Prudnikova T, Rezacova P, Prokop Z, Koudelakova T, Daniel L, Brezovsky J, Ikeda-Ohtsubo W, Sato Y, Kuty M, Nagata Y, Kuta Smatanova I, Damborsky J. Chaloupkova R, et al. Among authors: koudelakova t. Acta Crystallogr D Biol Crystallogr. 2014 Jul;70(Pt 7):1884-97. doi: 10.1107/S1399004714009018. Epub 2014 Jun 29. Acta Crystallogr D Biol Crystallogr. 2014. PMID: 25004965
Haloalkane dehalogenases: biotechnological applications.
Koudelakova T, Bidmanova S, Dvorak P, Pavelka A, Chaloupkova R, Prokop Z, Damborsky J. Koudelakova T, et al. Biotechnol J. 2013 Jan;8(1):32-45. doi: 10.1002/biot.201100486. Epub 2012 Sep 11. Biotechnol J. 2013. PMID: 22965918 Review.
Crystals of DhaA mutants from Rhodococcus rhodochrous NCIMB 13064 diffracted to ultrahigh resolution: crystallization and preliminary diffraction analysis.
Stsiapanava A, Koudelakova T, Lapkouski M, Pavlova M, Damborsky J, Smatanova IK. Stsiapanava A, et al. Among authors: koudelakova t. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Feb 1;64(Pt 2):137-40. doi: 10.1107/S1744309108002066. Epub 2008 Jan 31. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008. PMID: 18259069 Free PMC article.
Pathways and mechanisms for product release in the engineered haloalkane dehalogenases explored using classical and random acceleration molecular dynamics simulations.
Klvana M, Pavlova M, Koudelakova T, Chaloupkova R, Dvorak P, Prokop Z, Stsiapanava A, Kuty M, Kuta-Smatanova I, Dohnalek J, Kulhanek P, Wade RC, Damborsky J. Klvana M, et al. Among authors: koudelakova t. J Mol Biol. 2009 Oct 9;392(5):1339-56. doi: 10.1016/j.jmb.2009.06.076. Epub 2009 Jul 3. J Mol Biol. 2009. PMID: 19577578
Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineering.
Prokop Z, Sato Y, Brezovsky J, Mozga T, Chaloupkova R, Koudelakova T, Jerabek P, Stepankova V, Natsume R, van Leeuwen JG, Janssen DB, Florian J, Nagata Y, Senda T, Damborsky J. Prokop Z, et al. Among authors: koudelakova t. Angew Chem Int Ed Engl. 2010 Aug 16;49(35):6111-5. doi: 10.1002/anie.201001753. Angew Chem Int Ed Engl. 2010. PMID: 20645368 No abstract available.
13 results