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Hydrogenomics of the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus.
van de Werken HJ, Verhaart MR, VanFossen AL, Willquist K, Lewis DL, Nichols JD, Goorissen HP, Mongodin EF, Nelson KE, van Niel EW, Stams AJ, Ward DE, de Vos WM, van der Oost J, Kelly RM, Kengen SW. van de Werken HJ, et al. Among authors: van der oost j, van niel ew, de vos wm. Appl Environ Microbiol. 2008 Nov;74(21):6720-9. doi: 10.1128/AEM.00968-08. Epub 2008 Sep 5. Appl Environ Microbiol. 2008. PMID: 18776029 Free PMC article.
Identification of the missing links in prokaryotic pentose oxidation pathways: evidence for enzyme recruitment.
Brouns SJ, Walther J, Snijders AP, van de Werken HJ, Willemen HL, Worm P, de Vos MG, Andersson A, Lundgren M, Mazon HF, van den Heuvel RH, Nilsson P, Salmon L, de Vos WM, Wright PC, Bernander R, van der Oost J. Brouns SJ, et al. Among authors: van den heuvel rh, van der oost j, de vos mg, de vos wm, van de werken hj. J Biol Chem. 2006 Sep 15;281(37):27378-88. doi: 10.1074/jbc.M605549200. Epub 2006 Jul 17. J Biol Chem. 2006. PMID: 16849334 Free article.
Reconstruction of central carbon metabolism in Sulfolobus solfataricus using a two-dimensional gel electrophoresis map, stable isotope labelling and DNA microarray analysis.
Snijders AP, Walther J, Peter S, Kinnman I, de Vos MG, van de Werken HJ, Brouns SJ, van der Oost J, Wright PC. Snijders AP, et al. Among authors: van der oost j, de vos mg, van de werken hj. Proteomics. 2006 Mar;6(5):1518-29. doi: 10.1002/pmic.200402070. Proteomics. 2006. PMID: 16447154
Fusion transcripts and their genomic breakpoints in polyadenylated and ribosomal RNA-minus RNA sequencing data.
Hoogstrate Y, Komor MA, Böttcher R, van Riet J, van de Werken HJG, van Lieshout S, Hoffmann R, van den Broek E, Bolijn AS, Dits N, Sie D, van der Meer D, Pepers F, Bangma CH, van Leenders GJLH, Smid M, French PJ, Martens JWM, van Workum W, van der Spek PJ, Janssen B, Caldenhoven E, Rausch C, de Jong M, Stubbs AP, Meijer GA, Fijneman RJA, Jenster GW. Hoogstrate Y, et al. Gigascience. 2021 Dec 9;10(12):giab080. doi: 10.1093/gigascience/giab080. Gigascience. 2021. PMID: 34891161 Free PMC article.
Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons.
Smid M, Coebergh van den Braak RRJ, van de Werken HJG, van Riet J, van Galen A, de Weerd V, van der Vlugt-Daane M, Bril SI, Lalmahomed ZS, Kloosterman WP, Wilting SM, Foekens JA, IJzermans JNM; MATCH study group; Martens JWM, Sieuwerts AM. Smid M, et al. BMC Bioinformatics. 2018 Jun 22;19(1):236. doi: 10.1186/s12859-018-2246-7. BMC Bioinformatics. 2018. PMID: 29929481 Free PMC article.
The miR-200c/141-ZEB2-TGFβ axis is aberrant in human T-cell prolymphocytic leukemia.
Erkeland SJ, Stavast CJ, Schilperoord-Vermeulen J, Dal Collo G, Van de Werken HJG, Leon LG, Van Hoven-Beijen A, Van Zuijen I, Mueller YM, Bindels EM, De Ridder D, Kappers-Klunne MC, Van Lom K, Van der Velden VHJ, Langerak AW. Erkeland SJ, et al. Haematologica. 2022 Jan 1;107(1):143-153. doi: 10.3324/haematol.2020.263756. Haematologica. 2022. PMID: 33596640 Free PMC article.
86 results