van de Meent JW - Search Results

1

Probabilistic program inference in network-based epidemiological simulations.

Smedemark-Margulies N, Walters R, Zimmermann H, Laird L, van der Loo C, Kaushik N, Caceres R, van de Meent JW. Smedemark-Margulies N, et al. Among authors: van de meent jw. PLoS Comput Biol. 2022 Nov 7;18(11):e1010591. doi: 10.1371/journal.pcbi.1010591. eCollection 2022 Nov. PLoS Comput Biol. 2022. PMID: 36342957 Free PMC article.

2

That's the Wrong Lung! Evaluating and Improving the Interpretability of Unsupervised Multimodal Encoders for Medical Data.

McInerney DJ, Young G, van de Meent JW, Wallace BC. McInerney DJ, et al. Among authors: van de meent jw. Proc Conf Empir Methods Nat Lang Process. 2022 Dec;2022:3626-3648. Proc Conf Empir Methods Nat Lang Process. 2022. PMID: 37103483 Free PMC article.

3

Interoception as modeling, allostasis as control.

Sennesh E, Theriault J, Brooks D, van de Meent JW, Barrett LF, Quigley KS. Sennesh E, et al. Among authors: van de meent jw. Biol Psychol. 2022 Jan;167:108242. doi: 10.1016/j.biopsycho.2021.108242. Epub 2021 Dec 20. Biol Psychol. 2022. PMID: 34942287 Free PMC article.

4

A Computational Neural Model for Mapping Degenerate Neural Architectures.

Khan Z, Wang Y, Sennesh E, Dy J, Ostadabbas S, van de Meent JW, Hutchinson JB, Satpute AB. Khan Z, et al. Among authors: van de meent jw. Neuroinformatics. 2022 Oct;20(4):965-979. doi: 10.1007/s12021-022-09580-9. Epub 2022 Mar 29. Neuroinformatics. 2022. PMID: 35349109 Free PMC article.

5

Learning Disentangled Representations of Texts with Application to Biomedical Abstracts.

Jain S, Banner E, van de Meent JW, Marshall IJ, Wallace BC. Jain S, et al. Among authors: van de meent jw. Proc Conf Empir Methods Nat Lang Process. 2018 Oct-Nov;2018:4683-4693. doi: 10.18653/v1/d18-1497. Proc Conf Empir Methods Nat Lang Process. 2018. PMID: 34027519 Free PMC article.

6

A physical perspective on cytoplasmic streaming.

Goldstein RE, van de Meent JW. Goldstein RE, et al. Among authors: van de meent jw. Interface Focus. 2015 Aug 6;5(4):20150030. doi: 10.1098/rsfs.2015.0030. Interface Focus. 2015. PMID: 26464789 Free PMC article.

7

Statistical inference for nanopore sequencing with a biased random walk model.

Emmett KJ, Rosenstein JK, van de Meent JW, Shepard KL, Wiggins CH. Emmett KJ, et al. Among authors: van de meent jw. Biophys J. 2015 Apr 21;108(8):1852-5. doi: 10.1016/j.bpj.2015.03.013. Biophys J. 2015. PMID: 25902425 Free PMC article.

8

Single-molecule dataset (SMD): a generalized storage format for raw and processed single-molecule data.

Greenfeld M, van de Meent JW, Pavlichin DS, Mabuchi H, Wiggins CH, Gonzalez RL Jr, Herschlag D. Greenfeld M, et al. Among authors: van de meent jw. BMC Bioinformatics. 2015 Jan 16;16(1):3. doi: 10.1186/s12859-014-0429-4. BMC Bioinformatics. 2015. PMID: 25591752 Free PMC article.

9

Multiple LacI-mediated loops revealed by Bayesian statistics and tethered particle motion.

Johnson S, van de Meent JW, Phillips R, Wiggins CH, Lindén M. Johnson S, et al. Among authors: van de meent jw. Nucleic Acids Res. 2014;42(16):10265-77. doi: 10.1093/nar/gku563. Epub 2014 Aug 12. Nucleic Acids Res. 2014. PMID: 25120267 Free PMC article.

10

Empirical Bayes methods enable advanced population-level analyses of single-molecule FRET experiments.

van de Meent JW, Bronson JE, Wiggins CH, Gonzalez RL Jr. van de Meent JW, et al. Biophys J. 2014 Mar 18;106(6):1327-37. doi: 10.1016/j.bpj.2013.12.055. Biophys J. 2014. PMID: 24655508 Free PMC article.

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