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Scipion3: A workflow engine for cryo-electron microscopy image processing and structural biology.
Conesa P, Fonseca YC, Jiménez de la Morena J, Sharov G, de la Rosa-Trevín JM, Cuervo A, García Mena A, Rodríguez de Francisco B, Del Hoyo D, Herreros D, Marchan D, Strelak D, Fernández-Giménez E, Ramírez-Aportela E, de Isidro-Gómez FP, Sánchez I, Krieger J, Vilas JL, Del Cano L, Gragera M, Iceta M, Martínez M, Losana P, Melero R, Marabini R, Carazo JM, Sorzano COS. Conesa P, et al. Among authors: de la rosa trevin jm. Biol Imaging. 2023 Jun 29;3:e13. doi: 10.1017/S2633903X23000132. eCollection 2023. Biol Imaging. 2023. PMID: 38510163 Free PMC article.
Using RELION software within the Scipion framework.
Sharov G, Morado DR, Carroni M, de la Rosa-Trevín JM. Sharov G, et al. Among authors: de la rosa trevin jm. Acta Crystallogr D Struct Biol. 2021 Apr 1;77(Pt 4):403-410. doi: 10.1107/S2059798321001856. Epub 2021 Mar 30. Acta Crystallogr D Struct Biol. 2021. PMID: 33825701 Free PMC article.
Using Scipion for stream image processing at Cryo-EM facilities.
Gómez-Blanco J, de la Rosa-Trevín JM, Marabini R, Del Cano L, Jiménez A, Martínez M, Melero R, Majtner T, Maluenda D, Mota J, Rancel Y, Ramírez-Aportela E, Vilas JL, Carroni M, Fleischmann S, Lindahl E, Ashton AW, Basham M, Clare DK, Savage K, Siebert CA, Sharov GG, Sorzano COS, Conesa P, Carazo JM. Gómez-Blanco J, et al. Among authors: de la rosa trevin jm. J Struct Biol. 2018 Dec;204(3):457-463. doi: 10.1016/j.jsb.2018.10.001. Epub 2018 Oct 5. J Struct Biol. 2018. PMID: 30296492 Free PMC article.
Blind estimation of DED camera gain in Electron Microscopy.
Sorzano COS, Fernández-Giménez E, Peredo-Robinson V, Vargas J, Majtner T, Caffarena G, Otón J, Vilas JL, de la Rosa-Trevín JM, Melero R, Gómez-Blanco J, Cuenca J, Del Cano L, Conesa P, Marabini R, Carazo JM. Sorzano COS, et al. Among authors: de la rosa trevin jm. J Struct Biol. 2018 Aug;203(2):90-93. doi: 10.1016/j.jsb.2018.03.007. Epub 2018 Mar 15. J Struct Biol. 2018. PMID: 29551714
A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy.
Sorzano COS, Vargas J, Otón J, de la Rosa-Trevín JM, Vilas JL, Kazemi M, Melero R, Del Caño L, Cuenca J, Conesa P, Gómez-Blanco J, Marabini R, Carazo JM. Sorzano COS, et al. Among authors: de la rosa trevin jm. Biomed Res Int. 2017;2017:6482567. doi: 10.1155/2017/6482567. Epub 2017 Sep 17. Biomed Res Int. 2017. PMID: 29312997 Free PMC article. Review.
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