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The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool.
Jonkheer EM, Brankovics B, Houwers IM, van der Wolf JM, Bonants PJM, Vreeburg RAM, Bollema R, de Haan JR, Berke L, Smit S, de Ridder D, van der Lee TAJ. Jonkheer EM, et al. Among authors: de ridder d, de haan jr. BMC Genomics. 2021 Apr 14;22(1):265. doi: 10.1186/s12864-021-07583-5. BMC Genomics. 2021. PMID: 33849459 Free PMC article.
The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
Santuari L, Sanchez-Perez GF, Luijten M, Rutjens B, Terpstra I, Berke L, Gorte M, Prasad K, Bao D, Timmermans-Hereijgers JL, Maeo K, Nakamura K, Shimotohno A, Pencik A, Novak O, Ljung K, van Heesch S, de Bruijn E, Cuppen E, Willemsen V, Mähönen AP, Lukowitz W, Snel B, de Ridder D, Scheres B, Heidstra R. Santuari L, et al. Among authors: de ridder d, de bruijn e. Plant Cell. 2016 Dec;28(12):2937-2951. doi: 10.1105/tpc.16.00656. Epub 2016 Dec 5. Plant Cell. 2016. PMID: 27920338 Free PMC article.
Efficient inference of homologs in large eukaryotic pan-proteomes.
Sheikhizadeh Anari S, de Ridder D, Schranz ME, Smit S. Sheikhizadeh Anari S, et al. Among authors: de ridder d. BMC Bioinformatics. 2018 Sep 26;19(1):340. doi: 10.1186/s12859-018-2362-4. BMC Bioinformatics. 2018. PMID: 30257640 Free PMC article.
GeneNoteBook, a collaborative notebook for comparative genomics.
Holmer R, van Velzen R, Geurts R, Bisseling T, de Ridder D, Smit S. Holmer R, et al. Among authors: de ridder d. Bioinformatics. 2019 Nov 1;35(22):4779-4781. doi: 10.1093/bioinformatics/btz491. Bioinformatics. 2019. PMID: 31199463 Free PMC article.
Meiotic recombination profiling of interspecific hybrid F1 tomato pollen by linked read sequencing.
Rommel Fuentes R, Hesselink T, Nieuwenhuis R, Bakker L, Schijlen E, van Dooijeweert W, Diaz Trivino S, de Haan JR, Sanchez Perez G, Zhang X, Fransz P, de Jong H, van Dijk ADJ, de Ridder D, Peters SA. Rommel Fuentes R, et al. Among authors: de ridder d, de haan jr, de jong h. Plant J. 2020 May;102(3):480-492. doi: 10.1111/tpj.14640. Epub 2020 Jan 22. Plant J. 2020. PMID: 31820490 Free article.
930 results