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The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
Santuari L, Sanchez-Perez GF, Luijten M, Rutjens B, Terpstra I, Berke L, Gorte M, Prasad K, Bao D, Timmermans-Hereijgers JL, Maeo K, Nakamura K, Shimotohno A, Pencik A, Novak O, Ljung K, van Heesch S, de Bruijn E, Cuppen E, Willemsen V, Mähönen AP, Lukowitz W, Snel B, de Ridder D, Scheres B, Heidstra R. Santuari L, et al. Among authors: de ridder d, de bruijn e. Plant Cell. 2016 Dec;28(12):2937-2951. doi: 10.1105/tpc.16.00656. Epub 2016 Dec 5. Plant Cell. 2016. PMID: 27920338 Free PMC article.
AraQTL - workbench and archive for systems genetics in Arabidopsis thaliana.
Nijveen H, Ligterink W, Keurentjes JJ, Loudet O, Long J, Sterken MG, Prins P, Hilhorst HW, de Ridder D, Kammenga JE, Snoek BL. Nijveen H, et al. Among authors: de ridder d. Plant J. 2017 Mar;89(6):1225-1235. doi: 10.1111/tpj.13457. Epub 2017 Feb 13. Plant J. 2017. PMID: 27995664 Free article.
Correcting palindromes in long reads after whole-genome amplification.
Warris S, Schijlen E, van de Geest H, Vegesna R, Hesselink T, Te Lintel Hekkert B, Sanchez Perez G, Medvedev P, Makova KD, de Ridder D. Warris S, et al. Among authors: de ridder d. BMC Genomics. 2018 Nov 6;19(1):798. doi: 10.1186/s12864-018-5164-1. BMC Genomics. 2018. PMID: 30400848 Free PMC article.
Meiotic recombination profiling of interspecific hybrid F1 tomato pollen by linked read sequencing.
Rommel Fuentes R, Hesselink T, Nieuwenhuis R, Bakker L, Schijlen E, van Dooijeweert W, Diaz Trivino S, de Haan JR, Sanchez Perez G, Zhang X, Fransz P, de Jong H, van Dijk ADJ, de Ridder D, Peters SA. Rommel Fuentes R, et al. Among authors: de ridder d, de haan jr, de jong h. Plant J. 2020 May;102(3):480-492. doi: 10.1111/tpj.14640. Epub 2020 Jan 22. Plant J. 2020. PMID: 31820490 Free article.
The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool.
Jonkheer EM, Brankovics B, Houwers IM, van der Wolf JM, Bonants PJM, Vreeburg RAM, Bollema R, de Haan JR, Berke L, Smit S, de Ridder D, van der Lee TAJ. Jonkheer EM, et al. Among authors: de ridder d, de haan jr. BMC Genomics. 2021 Apr 14;22(1):265. doi: 10.1186/s12864-021-07583-5. BMC Genomics. 2021. PMID: 33849459 Free PMC article.
Signal-based optical map alignment.
Akdel M, van de Geest H, Schijlen E, van Rijswijck IMH, Smid EJ, Sanchez-Perez G, de Ridder D. Akdel M, et al. Among authors: de ridder d. PLoS One. 2021 Sep 30;16(9):e0253102. doi: 10.1371/journal.pone.0253102. eCollection 2021. PLoS One. 2021. PMID: 34591846 Free PMC article.
928 results