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A transcript finishing initiative for closing gaps in the human transcriptome.
Sogayar MC, Camargo AA, Bettoni F, Carraro DM, Pires LC, Parmigiani RB, Ferreira EN, de Sá Moreira E, do Rosário D de O Latorre M, Simpson AJ, Cruz LO, Degaki TL, Festa F, Massirer KB, Sogayar MC, Filho FC, Camargo LP, Cunha MA, De Souza SJ, Faria M Jr, Giuliatti S, Kopp L, de Oliveira PS, Paiva PB, Pereira AA, Pinheiro DG, Puga RD, S de Souza JE, Albuquerque DM, Andrade LE, Baia GS, Briones MR, Cavaleiro-Luna AM, Cerutti JM, Costa FF, Costanzi-Strauss E, Espreafico EM, Ferrasi AC, Ferro ES, Fortes MA, Furchi JR, Giannella-Neto D, Goldman GH, Goldman MH, Gruber A, Guimarães GS, Hackel C, Henrique-Silva F, Kimura ET, Leoni SG, Macedo C, Malnic B, Manzini B CV, Marie SK, Martinez-Rossi NM, Menossi M, Miracca EC, Nagai MA, Nobrega FG, Nobrega MP, Oba-Shinjo SM, Oliveira MK, Orabona GM, Otsuka AY, Paço-Larson ML, Paixão BM, Pandolfi JR, Pardini MI, Passos Bueno MR, Passos GA, Pesquero JB, Pessoa JG, Rahal P, Rainho CA, Reis CP, Ricca TI, Rodrigues V, Rogatto SR, Romano CM, Romeiro JG, Rossi A, Sá RG, Sales MM, Sant'Anna SC, Santarosa PL, Segato F, Silva WA Jr, Silva ID, Silva NP, Soares-Costa A, Sonati MF, Strauss BE, Tajara EH, Valentini SR, Villanova FE, … See abstract for full author list ➔ Sogayar MC, et al. Among authors: de souza sj, oliveira mk, de oliveira ps, de sa moreira e. Genome Res. 2004 Jul;14(7):1413-23. doi: 10.1101/gr.2111304. Epub 2004 Jun 14. Genome Res. 2004. PMID: 15197164 Free PMC article.
Shotgun sequencing of the human transcriptome with ORF expressed sequence tags.
Dias Neto E, Correa RG, Verjovski-Almeida S, Briones MR, Nagai MA, da Silva W Jr, Zago MA, Bordin S, Costa FF, Goldman GH, Carvalho AF, Matsukuma A, Baia GS, Simpson DH, Brunstein A, de Oliveira PS, Bucher P, Jongeneel CV, O'Hare MJ, Soares F, Brentani RR, Reis LF, de Souza SJ, Simpson AJ. Dias Neto E, et al. Among authors: de souza sj, de oliveira ps. Proc Natl Acad Sci U S A. 2000 Mar 28;97(7):3491-6. doi: 10.1073/pnas.97.7.3491. Proc Natl Acad Sci U S A. 2000. PMID: 10737800 Free PMC article.
ORESTES are enriched in rare exon usage variants affecting the encoded proteins.
Sakabe NJ, de Souza JE, Galante PA, de Oliveira PS, Passetti F, Brentani H, Osório EC, Zaiats AC, Leerkes MR, Kitajima JP, Brentani RR, Strausberg RL, Simpson AJ, de Souza SJ. Sakabe NJ, et al. Among authors: de souza sj, de souza je, de oliveira ps. C R Biol. 2003 Oct-Nov;326(10-11):979-85. doi: 10.1016/j.crvi.2003.09.027. C R Biol. 2003. PMID: 14744104 Free article.
pp-Blast: a "pseudo-parallel" Blast.
Osório EC, de Souza JE, Zaiats AC, de Oliveira PS, de Souza SJ. Osório EC, et al. Among authors: de souza sj, de souza je, de oliveira ps. Braz J Med Biol Res. 2003 Apr;36(4):463-4. doi: 10.1590/s0100-879x2003000400007. Epub 2003 Apr 8. Braz J Med Biol Res. 2003. PMID: 12700823 Free article.
Structural shifts of aldehyde dehydrogenase enzymes were instrumental for the early evolution of retinoid-dependent axial patterning in metazoans.
Sobreira TJ, Marlétaz F, Simões-Costa M, Schechtman D, Pereira AC, Brunet F, Sweeney S, Pani A, Aronowicz J, Lowe CJ, Davidson B, Laudet V, Bronner M, de Oliveira PS, Schubert M, Xavier-Neto J. Sobreira TJ, et al. Among authors: de oliveira ps. Proc Natl Acad Sci U S A. 2011 Jan 4;108(1):226-31. doi: 10.1073/pnas.1011223108. Epub 2010 Dec 17. Proc Natl Acad Sci U S A. 2011. PMID: 21169504 Free PMC article.
KVFinder: steered identification of protein cavities as a PyMOL plugin.
Oliveira SH, Ferraz FA, Honorato RV, Xavier-Neto J, Sobreira TJ, de Oliveira PS. Oliveira SH, et al. Among authors: de oliveira ps. BMC Bioinformatics. 2014 Jun 17;15:197. doi: 10.1186/1471-2105-15-197. BMC Bioinformatics. 2014. PMID: 24938294 Free PMC article.
Structural analysis of TrkA mutations in patients with congenital insensitivity to pain reveals PLCγ as an analgesic drug target.
Moraes BC, Ribeiro-Filho HV, Roldão AP, Toniolo EF, Carretero GPB, Sgro GG, Batista FAH, Berardi DE, Oliveira VRS, Tomasin R, Vieceli FM, Pramio DT, Cardoso AB, Figueira ACM, Farah SC, Devi LA, Dale CS, de Oliveira PSL, Schechtman D. Moraes BC, et al. Sci Signal. 2022 Apr 26;15(731):eabm6046. doi: 10.1126/scisignal.abm6046. Epub 2022 Apr 26. Sci Signal. 2022. PMID: 35471943
120 results