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Page 1
Scalable neighbour search and alignment with uvaia.
de Oliveira Martins L, Mather AE, Page AJ. de Oliveira Martins L, et al. PeerJ. 2024 Mar 6;12:e16890. doi: 10.7717/peerj.16890. eCollection 2024. PeerJ. 2024. PMID: 38464752 Free PMC article.
Repurposing an integrated national influenza platform for genomic surveillance of SARS-CoV-2 in Ghana: a molecular epidemiological analysis.
Asante IA, Hsu SN, Boatemaa L, Kwasah L, Adusei-Poku M, Odoom JK, Awuku-Larbi Y, Foulkes BH, Oliver-Commey J, Asiedu EK, Parker MD, Mitja O, Eggo RM, de Oliveira-Martins L, Asiedu-Bekoe F, Laryea DO, Kuma-Aboagye P, Marks M, de Silva TI, Ampofo WK. Asante IA, et al. Among authors: de oliveira martins l. Lancet Glob Health. 2023 Jul;11(7):e1075-e1085. doi: 10.1016/S2214-109X(23)00189-4. Lancet Glob Health. 2023. PMID: 37349034 Free PMC article.
SARS-CoV-2 mutations on diagnostic gene targets in the second wave in Zimbabwe: A retrospective genomic analysis.
Nyagupe C, de Oliveira Martins L, Gumbo H, Mashe T, Takawira T, Maeka KK, Juru A, Chikanda LK, Tauya AR, Page AJ, Kingsley RA, Simbi R, Chirenda J, Manasa J, Ruhanya V, Mavenyengwa RT. Nyagupe C, et al. Among authors: de oliveira martins l. S Afr Med J. 2023 Mar 2;113(3):141-147. doi: 10.7196/SAMJ.2023.v113i3.16762. S Afr Med J. 2023. PMID: 36876349 Free article.
Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway.
Willett BJ, Grove J, MacLean OA, Wilkie C, De Lorenzo G, Furnon W, Cantoni D, Scott S, Logan N, Ashraf S, Manali M, Szemiel A, Cowton V, Vink E, Harvey WT, Davis C, Asamaphan P, Smollett K, Tong L, Orton R, Hughes J, Holland P, Silva V, Pascall DJ, Puxty K, da Silva Filipe A, Yebra G, Shaaban S, Holden MTG, Pinto RM, Gunson R, Templeton K, Murcia PR, Patel AH, Klenerman P, Dunachie S; PITCH Consortium; COVID-19 Genomics UK (COG-UK) Consortium; Haughney J, Robertson DL, Palmarini M, Ray S, Thomson EC. Willett BJ, et al. Nat Microbiol. 2022 Oct;7(10):1709. doi: 10.1038/s41564-022-01241-6. Nat Microbiol. 2022. PMID: 36114232 Free PMC article. No abstract available.
The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance.
Tegally H, San JE, Cotten M, Moir M, Tegomoh B, Mboowa G, Martin DP, Baxter C, Lambisia AW, Diallo A, Amoako DG, Diagne MM, Sisay A, Zekri AN, Gueye AS, Sangare AK, Ouedraogo AS, Sow A, Musa AO, Sesay AK, Abias AG, Elzagheid AI, Lagare A, Kemi AS, Abar AE, Johnson AA, Fowotade A, Oluwapelumi AO, Amuri AA, Juru A, Kandeil A, Mostafa A, Rebai A, Sayed A, Kazeem A, Balde A, Christoffels A, Trotter AJ, Campbell A, Keita AK, Kone A, Bouzid A, Souissi A, Agweyu A, Naguib A, Gutierrez AV, Nkeshimana A, Page AJ, Yadouleton A, Vinze A, Happi AN, Chouikha A, Iranzadeh A, Maharaj A, Batchi-Bouyou AL, Ismail A, Sylverken AA, Goba A, Femi A, Sijuwola AE, Marycelin B, Salako BL, Oderinde BS, Bolajoko B, Diarra B, Herring BL, Tsofa B, Lekana-Douki B, Mvula B, Njanpop-Lafourcade BM, Marondera BT, Khaireh BA, Kouriba B, Adu B, Pool B, McInnis B, Brook C, Williamson C, Nduwimana C, Anscombe C, Pratt CB, Scheepers C, Akoua-Koffi CG, Agoti CN, Mapanguy CM, Loucoubar C, Onwuamah CK, Ihekweazu C, Malaka CN, Peyrefitte C, Grace C, Omoruyi CE, Rafaï CD, Morang'a CM, Erameh C, Lule DB, Bridges DJ, Mukadi-Bamuleka D, Park D, Rasmussen DA, Baker D, Nokes DJ, Ssemwanga D, Tshiabuila D, Amuzu DSY, Goedhals D,… See abstract for full author list ➔ Tegally H, et al. Among authors: de oliveira martins l. Science. 2022 Oct 7;378(6615):eabq5358. doi: 10.1126/science.abq5358. Epub 2022 Oct 7. Science. 2022. PMID: 36108049 Free PMC article.
Dynamics of competing SARS-CoV-2 variants during the Omicron epidemic in England.
Eales O, de Oliveira Martins L, Page AJ, Wang H, Bodinier B, Tang D, Haw D, Jonnerby J, Atchison C, Ashby D, Barclay W, Taylor G, Cooke G, Ward H, Darzi A, Riley S, Elliott P, Donnelly CA, Chadeau-Hyam M. Eales O, et al. Among authors: de oliveira martins l. Nat Commun. 2022 Jul 28;13(1):4375. doi: 10.1038/s41467-022-32096-4. Nat Commun. 2022. PMID: 35902613 Free PMC article.
SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2.
Eales O, Page AJ, de Oliveira Martins L, Wang H, Bodinier B, Haw D, Jonnerby J, Atchison C; COVID-19 Genomics UK (COG-UK) Consortium; Ashby D, Barclay W, Taylor G, Cooke G, Ward H, Darzi A, Riley S, Chadeau-Hyam M, Donnelly CA, Elliott P. Eales O, et al. Among authors: de oliveira martins l. BMC Infect Dis. 2022 Jul 27;22(1):647. doi: 10.1186/s12879-022-07628-4. BMC Infect Dis. 2022. PMID: 35896970 Free PMC article.
Replacement of the Alpha variant of SARS-CoV-2 by the Delta variant in Lebanon between April and June 2021.
Merhi G, Trotter AJ, de Oliveira Martins L, Koweyes J, Le-Viet T, Abou Naja H, Al Buaini M, Prosolek SJ, Alikhan NF, Lott M, Tohmeh T, Badran B, Jupp OJ, Gardner S, Felgate MW, Makin KA, Wilkinson JM, Stanley R, Sesay AK, Webber MA, Davidson RK, Ghosn N, Pallen M, Hasan H, Page AJ, Tokajian S. Merhi G, et al. Among authors: de oliveira martins l. Microb Genom. 2022 Jul;8(7):mgen000838. doi: 10.1099/mgen.0.000838. Microb Genom. 2022. PMID: 35876490 Free PMC article.
48 results