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A highly virulent variant of HIV-1 circulating in the Netherlands.
Wymant C, Bezemer D, Blanquart F, Ferretti L, Gall A, Hall M, Golubchik T, Bakker M, Ong SH, Zhao L, Bonsall D, de Cesare M, MacIntyre-Cockett G, Abeler-Dörner L, Albert J, Bannert N, Fellay J, Grabowski MK, Gunsenheimer-Bartmeyer B, Günthard HF, Kivelä P, Kouyos RD, Laeyendecker O, Meyer L, Porter K, Ristola M, van Sighem A, Berkhout B, Kellam P, Cornelissen M, Reiss P, Fraser C; Netherlands ATHENA HIV Observational Cohort†; BEEHIVE Collaboration†. Wymant C, et al. Among authors: de cesare m. Science. 2022 Feb 4;375(6580):540-545. doi: 10.1126/science.abk1688. Epub 2022 Feb 3. Science. 2022. PMID: 35113714 Free article.
PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity.
Wymant C, Hall M, Ratmann O, Bonsall D, Golubchik T, de Cesare M, Gall A, Cornelissen M, Fraser C; STOP-HCV Consortium, The Maela Pneumococcal Collaboration, and The BEEHIVE Collaboration. Wymant C, et al. Among authors: de cesare m. Mol Biol Evol. 2018 Mar 1;35(3):719-733. doi: 10.1093/molbev/msx304. Mol Biol Evol. 2018. PMID: 29186559 Free PMC article.
Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV).
McNaughton AL, Roberts HE, Bonsall D, de Cesare M, Mokaya J, Lumley SF, Golubchik T, Piazza P, Martin JB, de Lara C, Brown A, Ansari MA, Bowden R, Barnes E, Matthews PC. McNaughton AL, et al. Among authors: de lara c, de cesare m. Sci Rep. 2019 May 8;9(1):7081. doi: 10.1038/s41598-019-43524-9. Sci Rep. 2019. PMID: 31068626 Free PMC article.
A Comprehensive Genomics Solution for HIV Surveillance and Clinical Monitoring in Low-Income Settings.
Bonsall D, Golubchik T, de Cesare M, Limbada M, Kosloff B, MacIntyre-Cockett G, Hall M, Wymant C, Ansari MA, Abeler-Dörner L, Schaap A, Brown A, Barnes E, Piwowar-Manning E, Eshleman S, Wilson E, Emel L, Hayes R, Fidler S, Ayles H, Bowden R, Fraser C; HPTN 071 (PopART) Team. Bonsall D, et al. Among authors: de cesare m. J Clin Microbiol. 2020 Sep 22;58(10):e00382-20. doi: 10.1128/JCM.00382-20. Print 2020 Sep 22. J Clin Microbiol. 2020. PMID: 32669382 Free PMC article.
Performance of a high-throughput next-generation sequencing method for analysis of HIV drug resistance and viral load.
Fogel JM, Bonsall D, Cummings V, Bowden R, Golubchik T, de Cesare M, Wilson EA, Gamble T, Del Rio C, Batey DS, Mayer KH, Farley JE, Hughes JP, Remien RH, Beyrer C, Fraser C, Eshleman SH. Fogel JM, et al. Among authors: de cesare m. J Antimicrob Chemother. 2020 Dec 1;75(12):3510-3516. doi: 10.1093/jac/dkaa352. J Antimicrob Chemother. 2020. PMID: 32772080 Free PMC article.
SARS-CoV-2 within-host diversity and transmission.
Lythgoe KA, Hall M, Ferretti L, de Cesare M, MacIntyre-Cockett G, Trebes A, Andersson M, Otecko N, Wise EL, Moore N, Lynch J, Kidd S, Cortes N, Mori M, Williams R, Vernet G, Justice A, Green A, Nicholls SM, Ansari MA, Abeler-Dörner L, Moore CE, Peto TEA, Eyre DW, Shaw R, Simmonds P, Buck D, Todd JA; Oxford Virus Sequencing Analysis Group (OVSG); Connor TR, Ashraf S, da Silva Filipe A, Shepherd J, Thomson EC; COVID-19 Genomics UK (COG-UK) Consortium; Bonsall D, Fraser C, Golubchik T. Lythgoe KA, et al. Among authors: de cesare m. Science. 2021 Apr 16;372(6539):eabg0821. doi: 10.1126/science.abg0821. Epub 2021 Mar 9. Science. 2021. PMID: 33688063 Free PMC article.
Distinct patterns of within-host virus populations between two subgroups of human respiratory syncytial virus.
Lin GL, Drysdale SB, Snape MD, O'Connor D, Brown A, MacIntyre-Cockett G, Mellado-Gomez E, de Cesare M, Bonsall D, Ansari MA, Öner D, Aerssens J, Butler C, Bont L, Openshaw P, Martinón-Torres F, Nair H, Bowden R; RESCEU Investigators; Golubchik T, Pollard AJ. Lin GL, et al. Among authors: de cesare m. Nat Commun. 2021 Aug 26;12(1):5125. doi: 10.1038/s41467-021-25265-4. Nat Commun. 2021. PMID: 34446722 Free PMC article. Clinical Trial.
The mutational spectrum of SARS-CoV-2 genomic and antigenomic RNA.
Zhao L, Hall M, de Cesare M, MacIntyre-Cockett G, Lythgoe K, Fraser C, Bonsall D, Golubchik T; COVID-19 Genomics UK (COG-UK) Consortium; Ferretti L. Zhao L, et al. Among authors: de cesare m. Proc Biol Sci. 2022 Nov 30;289(1987):20221747. doi: 10.1098/rspb.2022.1747. Epub 2022 Nov 16. Proc Biol Sci. 2022. PMID: 36382519 Free PMC article.
156 results