de Brevern AG - Search Results

1

Data set of intrinsically disordered proteins analysed at a local protein conformation level.

Melarkode Vattekatte A, Narwani TJ, Floch A, Maljković M, Bisoo S, Shinada NK, Kranjc A, Gelly JC, Srinivasan N, Mitić N, de Brevern AG. Melarkode Vattekatte A, et al. Among authors: de brevern ag. Data Brief. 2020 Mar 5;29:105383. doi: 10.1016/j.dib.2020.105383. eCollection 2020 Apr. Data Brief. 2020. PMID: 32195305 Free PMC article.

2

Special Issue: New Advances in Bioinformatics and Biomedical Engineering Using Machine Learning Techniques, IWBBIO-2022.

Valenzuela O, Ortuño F, Benso A, Schwartz JM, de Brevern AG, Rojas I. Valenzuela O, et al. Among authors: de brevern ag. Genes (Basel). 2023 Aug 1;14(8):1574. doi: 10.3390/genes14081574. Genes (Basel). 2023. PMID: 37628626 Free PMC article.

3

'Protein Peeling': an approach for splitting a 3D protein structure into compact fragments.

Gelly JC, de Brevern AG, Hazout S. Gelly JC, et al. Among authors: de brevern ag. Bioinformatics. 2006 Jan 15;22(2):129-33. doi: 10.1093/bioinformatics/bti773. Epub 2005 Nov 14. Bioinformatics. 2006. PMID: 16301202

4

Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet.

Tyagi M, Sharma P, Swamy CS, Cadet F, Srinivasan N, de Brevern AG, Offmann B. Tyagi M, et al. Among authors: de brevern ag. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W119-23. doi: 10.1093/nar/gkl199. Nucleic Acids Res. 2006. PMID: 16844973 Free PMC article.

5

A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications.

Tyagi M, Gowri VS, Srinivasan N, de Brevern AG, Offmann B. Tyagi M, et al. Among authors: de brevern ag. Proteins. 2006 Oct 1;65(1):32-9. doi: 10.1002/prot.21087. Proteins. 2006. PMID: 16894618 Free article.

6

Protein structure mining using a structural alphabet.

Tyagi M, de Brevern AG, Srinivasan N, Offmann B. Tyagi M, et al. Among authors: de brevern ag. Proteins. 2008 May 1;71(2):920-37. doi: 10.1002/prot.21776. Proteins. 2008. PMID: 18004784

7

Protein Peeling 3D: new tools for analyzing protein structures.

Gelly JC, de Brevern AG. Gelly JC, et al. Among authors: de brevern ag. Bioinformatics. 2011 Jan 1;27(1):132-3. doi: 10.1093/bioinformatics/btq610. Epub 2010 Nov 11. Bioinformatics. 2011. PMID: 21075745 Free article.

8

Identification of local conformational similarity in structurally variable regions of homologous proteins using protein blocks.

Agarwal G, Mahajan S, Srinivasan N, de Brevern AG. Agarwal G, et al. Among authors: de brevern ag. PLoS One. 2011 Mar 18;6(3):e17826. doi: 10.1371/journal.pone.0017826. PLoS One. 2011. PMID: 21445259 Free PMC article.

9

Assignment of PolyProline II conformation and analysis of sequence--structure relationship.

Mansiaux Y, Joseph AP, Gelly JC, de Brevern AG. Mansiaux Y, et al. Among authors: de brevern ag. PLoS One. 2011 Mar 31;6(3):e18401. doi: 10.1371/journal.pone.0018401. PLoS One. 2011. PMID: 21483785 Free PMC article.

10

Improvement of protein structure comparison using a structural alphabet.

Joseph AP, Srinivasan N, de Brevern AG. Joseph AP, et al. Among authors: de brevern ag. Biochimie. 2011 Sep;93(9):1434-45. doi: 10.1016/j.biochi.2011.04.010. Epub 2011 May 5. Biochimie. 2011. PMID: 21569819 Free article.

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