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Exploration of Bacterial Bottlenecks and Streptococcus pneumoniae Pathogenesis by CRISPRi-Seq.
Cell Host Microbe. 2021 Jan 13;29(1):107-120.e6. doi: 10.1016/j.chom.2020.10.001. Epub 2020 Oct 28.
Cell Host Microbe. 2021.
PMID: 33120116
Free PMC article.
CRISPRi-seq for genome-wide fitness quantification in bacteria.
de Bakker V, Liu X, Bravo AM, Veening JW.
de Bakker V, et al.
Nat Protoc. 2022 Feb;17(2):252-281. doi: 10.1038/s41596-021-00639-6. Epub 2022 Jan 7.
Nat Protoc. 2022.
PMID: 34997243
Review.
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Amoxicillin-resistant Streptococcus pneumoniae can be resensitized by targeting the mevalonate pathway as indicated by sCRilecs-seq.
Dewachter L, Dénéréaz J, Liu X, de Bakker V, Costa C, Baldry M, Sirard JC, Veening JW.
Dewachter L, et al. Among authors: de bakker v.
Elife. 2022 Jun 24;11:e75607. doi: 10.7554/eLife.75607.
Elife. 2022.
PMID: 35748540
Free PMC article.
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A conserved antigen induces respiratory Th17-mediated broad serotype protection against pneumococcal superinfection.
Liu X, Van Maele L, Matarazzo L, Soulard D, Alves Duarte da Silva V, de Bakker V, Dénéréaz J, Bock FP, Taschner M, Ou J, Gruber S, Nizet V, Sirard JC, Veening JW.
Liu X, et al. Among authors: de bakker v.
Cell Host Microbe. 2024 Mar 13;32(3):304-314.e8. doi: 10.1016/j.chom.2024.02.002. Epub 2024 Feb 27.
Cell Host Microbe. 2024.
PMID: 38417443
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Klebsiella pneumoniae OmpR facilitates lung infection through transcriptional regulation of key virulence factors.
Janssen AB, de Bakker V, Aprianto R, Trebosc V, Kemmer C, Pieren M, Veening J-W.
Janssen AB, et al. Among authors: de bakker v.
Microbiol Spectr. 2024 Jan 11;12(1):e0396623. doi: 10.1128/spectrum.03966-23. Epub 2023 Dec 15.
Microbiol Spectr. 2024.
PMID: 38099618
Free PMC article.
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Deep Divergence and Genomic Diversification of Gut Symbionts of Neotropical Stingless Bees.
Sarton-Lohéac G, Nunes da Silva CG, Mazel F, Baud G, de Bakker V, Das S, El Chazli Y, Ellegaard K, Garcia-Garcera M, Glover N, Liberti J, Nacif Marçal L, Prasad A, Somerville V; SAGE class 2019-2020 and 2020-2021; Bonilla-Rosso G, Engel P.
Sarton-Lohéac G, et al. Among authors: de bakker v.
mBio. 2023 Apr 25;14(2):e0353822. doi: 10.1128/mbio.03538-22. Epub 2023 Mar 20.
mBio. 2023.
PMID: 36939321
Free PMC article.
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