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Finding protein-protein interaction patterns by contact map matching.
Melo RC, Ribeiro C, Murray CS, Veloso CJ, da Silveira CH, Neshich G, Meira W Jr, Carceroni RL, Santoro MM. Melo RC, et al. Among authors: da silveira ch. Genet Mol Res. 2007 Oct 5;6(4):946-63. Genet Mol Res. 2007. PMID: 18058715 Free article.
Analysis of binding properties and specificity through identification of the interface forming residues (IFR) for serine proteases in silico docked to different inhibitors.
Ribeiro C, Togawa RC, Neshich IA, Mazoni I, Mancini AL, Minardi RC, da Silveira CH, Jardine JG, Santoro MM, Neshich G. Ribeiro C, et al. Among authors: da silveira ch. BMC Struct Biol. 2010 Oct 20;10:36. doi: 10.1186/1472-6807-10-36. BMC Struct Biol. 2010. PMID: 20961427 Free PMC article.
visGReMLIN: graph mining-based detection and visualization of conserved motifs at 3D protein-ligand interface at the atomic level.
Ribeiro VS, Santana CA, Fassio AV, Cerqueira FR, da Silveira CH, Romanelli JPR, Patarroyo-Vargas A, Oliveira MGA, Gonçalves-Almeida V, Izidoro SC, de Melo-Minardi RC, Silveira SA. Ribeiro VS, et al. Among authors: da silveira ch. BMC Bioinformatics. 2020 Mar 11;21(Suppl 2):80. doi: 10.1186/s12859-020-3347-7. BMC Bioinformatics. 2020. PMID: 32164574 Free PMC article.
21 results