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Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package.
Griffiths EJ, Timme RE, Mendes CI, Page AJ, Alikhan NF, Fornika D, Maguire F, Campos J, Park D, Olawoye IB, Oluniyi PE, Anderson D, Christoffels A, da Silva AG, Cameron R, Dooley D, Katz LS, Black A, Karsch-Mizrachi I, Barrett T, Johnston A, Connor TR, Nicholls SM, Witney AA, Tyson GH, Tausch SH, Raphenya AR, Alcock B, Aanensen DM, Hodcroft E, Hsiao WWL, Vasconcelos ATR, MacCannell DR. Griffiths EJ, et al. Among authors: da silva ag. Gigascience. 2022 Feb 16;11:giac003. doi: 10.1093/gigascience/giac003. Gigascience. 2022. PMID: 35169842 Free PMC article.
Complete microbial genomes for public health in Australia and the Southwest Pacific.
Baines SL, da Silva AG, Carter GP, Jennison A, Rathnayake I, Graham RM, Sintchenko V, Wang Q, Rockett RJ, Timms VJ, Martinez E, Ballard S, Tomita T, Isles N, Horan KA, Pitchers W, Stinear TP, Williamson DA, Howden BP, Seemann T, Communicable Diseases Genomics Network Cdgn. Baines SL, et al. Among authors: da silva ag. Microb Genom. 2020 Dec;6(12):mgen000471. doi: 10.1099/mgen.0.000471. Epub 2020 Nov 12. Microb Genom. 2020. PMID: 33180013 Free PMC article.
Measuring Natural Selection.
da Silva AG. da Silva AG. Methods Mol Biol. 2017;1525:315-347. doi: 10.1007/978-1-4939-6622-6_13. Methods Mol Biol. 2017. PMID: 27896727
Genomic Insights into a Sustained National Outbreak of Yersinia pseudotuberculosis.
Williamson DA, Baines SL, Carter GP, da Silva AG, Ren X, Sherwood J, Dufour M, Schultz MB, French NP, Seemann T, Stinear TP, Howden BP. Williamson DA, et al. Among authors: da silva ag. Genome Biol Evol. 2016 Dec 1;8(12):3806-3814. doi: 10.1093/gbe/evw285. Genome Biol Evol. 2016. PMID: 28173076 Free PMC article.
Genomic Analysis of Multiresistant Staphylococcus capitis Associated with Neonatal Sepsis.
Carter GP, Ussher JE, Da Silva AG, Baines SL, Heffernan H, Riley TV, Broadbent R, van der Linden A, Lee J, Monk IR, Stinear TP, Howden BP, Williamson DA. Carter GP, et al. Among authors: da silva ag. Antimicrob Agents Chemother. 2018 Oct 24;62(11):e00898-18. doi: 10.1128/AAC.00898-18. Print 2018 Nov. Antimicrob Agents Chemother. 2018. PMID: 30150477 Free PMC article.
Reversible vancomycin susceptibility within emerging ST1421 Enterococcus faecium strains is associated with rearranged vanA-gene clusters and increased vanA plasmid copy number.
Wagner TM, Janice J, Schulz M, Ballard SA, da Silva AG, Coombs GW, Daley DA, Pang S, Mowlaboccus S, Stinear T, Hegstad K, Howden BP, Sundsfjord A. Wagner TM, et al. Among authors: da silva ag. Int J Antimicrob Agents. 2023 Jul;62(1):106849. doi: 10.1016/j.ijantimicag.2023.106849. Epub 2023 May 13. Int J Antimicrob Agents. 2023. PMID: 37187337 Free article.
196 results