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Page 1
Finding our way through phenotypes.
Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, Das S, Dececchi TA, Dettai A, Diogo R, Druzinsky RE, Dumontier M, Franz NM, Friedrich F, Gkoutos GV, Haendel M, Harmon LJ, Hayamizu TF, He Y, Hines HM, Ibrahim N, Jackson LM, Jaiswal P, James-Zorn C, Köhler S, Lecointre G, Lapp H, Lawrence CJ, Le Novère N, Lundberg JG, Macklin J, Mast AR, Midford PE, Mikó I, Mungall CJ, Oellrich A, Osumi-Sutherland D, Parkinson H, Ramírez MJ, Richter S, Robinson PN, Ruttenberg A, Schulz KS, Segerdell E, Seltmann KC, Sharkey MJ, Smith AD, Smith B, Specht CD, Squires RB, Thacker RW, Thessen A, Fernandez-Triana J, Vihinen M, Vize PD, Vogt L, Wall CE, Walls RL, Westerfeld M, Wharton RA, Wirkner CS, Woolley JB, Yoder MJ, Zorn AM, Mabee P. Deans AR, et al. Among authors: zorn am. PLoS Biol. 2015 Jan 6;13(1):e1002033. doi: 10.1371/journal.pbio.1002033. eCollection 2015 Jan. PLoS Biol. 2015. PMID: 25562316 Free PMC article.
Xenbase: gene expression and improved integration.
Bowes JB, Snyder KA, Segerdell E, Jarabek CJ, Azam K, Zorn AM, Vize PD. Bowes JB, et al. Among authors: zorn am. Nucleic Acids Res. 2010 Jan;38(Database issue):D607-12. doi: 10.1093/nar/gkp953. Epub 2009 Nov 1. Nucleic Acids Res. 2010. PMID: 19884130 Free PMC article.
Xenbase: expansion and updates of the Xenopus model organism database.
James-Zorn C, Ponferrada VG, Jarabek CJ, Burns KA, Segerdell EJ, Lee J, Snyder K, Bhattacharyya B, Karpinka JB, Fortriede J, Bowes JB, Zorn AM, Vize PD. James-Zorn C, et al. Among authors: zorn am. Nucleic Acids Res. 2013 Jan;41(Database issue):D865-70. doi: 10.1093/nar/gks1025. Epub 2012 Nov 3. Nucleic Acids Res. 2013. PMID: 23125366 Free PMC article.
The Xenbase literature curation process.
Bowes JB, Snyder KA, James-Zorn C, Ponferrada VG, Jarabek CJ, Burns KA, Bhattacharyya B, Zorn AM, Vize PD. Bowes JB, et al. Among authors: zorn am. Database (Oxford). 2013 Jan 9;2013:bas046. doi: 10.1093/database/bas046. Print 2013. Database (Oxford). 2013. PMID: 23303299 Free PMC article.
Xenbase: Core features, data acquisition, and data processing.
James-Zorn C, Ponferrada VG, Burns KA, Fortriede JD, Lotay VS, Liu Y, Brad Karpinka J, Karimi K, Zorn AM, Vize PD. James-Zorn C, et al. Among authors: zorn am. Genesis. 2015 Aug;53(8):486-97. doi: 10.1002/dvg.22873. Epub 2015 Jul 16. Genesis. 2015. PMID: 26150211 Free PMC article.
Xenopus genomic data and browser resources.
Vize PD, Zorn AM. Vize PD, et al. Among authors: zorn am. Dev Biol. 2017 Jun 15;426(2):194-199. doi: 10.1016/j.ydbio.2016.03.030. Epub 2016 Mar 31. Dev Biol. 2017. PMID: 27039265 Free PMC article. Review.
Xenbase: a genomic, epigenomic and transcriptomic model organism database.
Karimi K, Fortriede JD, Lotay VS, Burns KA, Wang DZ, Fisher ME, Pells TJ, James-Zorn C, Wang Y, Ponferrada VG, Chu S, Chaturvedi P, Zorn AM, Vize PD. Karimi K, et al. Among authors: zorn am. Nucleic Acids Res. 2018 Jan 4;46(D1):D861-D868. doi: 10.1093/nar/gkx936. Nucleic Acids Res. 2018. PMID: 29059324 Free PMC article.
Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database.
James-Zorn C, Ponferrada V, Fisher ME, Burns K, Fortriede J, Segerdell E, Karimi K, Lotay V, Wang DZ, Chu S, Pells T, Wang Y, Vize PD, Zorn A. James-Zorn C, et al. Methods Mol Biol. 2018;1757:251-305. doi: 10.1007/978-1-4939-7737-6_10. Methods Mol Biol. 2018. PMID: 29761462 Free PMC article.
149 results