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Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species.
Li N, He Q, Wang J, Wang B, Zhao J, Huang S, Yang T, Tang Y, Yang S, Aisimutuola P, Xu R, Hu J, Jia C, Ma K, Li Z, Jiang F, Gao J, Lan H, Zhou Y, Zhang X, Huang S, Fei Z, Wang H, Li H, Yu Q. Li N, et al. Among authors: zhou y. Nat Genet. 2023 May;55(5):852-860. doi: 10.1038/s41588-023-01340-y. Epub 2023 Apr 6. Nat Genet. 2023. PMID: 37024581 Free PMC article.
Genome evolution and diversity of wild and cultivated potatoes.
Tang D, Jia Y, Zhang J, Li H, Cheng L, Wang P, Bao Z, Liu Z, Feng S, Zhu X, Li D, Zhu G, Wang H, Zhou Y, Zhou Y, Bryan GJ, Buell CR, Zhang C, Huang S. Tang D, et al. Among authors: zhou y. Nature. 2022 Jun;606(7914):535-541. doi: 10.1038/s41586-022-04822-x. Epub 2022 Jun 8. Nature. 2022. PMID: 35676481 Free PMC article.
Addendum: Genome evolution and diversity of wild and cultivated potatoes.
Tang D, Jia Y, Zhang J, Li H, Cheng L, Wang P, Bao Z, Liu Z, Feng S, Zhu X, Li D, Zhu G, Wang H, Zhou Y, Zhou Y, Bryan GJ, Buell CR, Zhang C, Huang S. Tang D, et al. Among authors: zhou y. Nature. 2022 Sep;609(7929):E14. doi: 10.1038/s41586-022-05298-5. Nature. 2022. PMID: 36100670 Free PMC article. No abstract available.
Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding.
Wu Y, Li D, Hu Y, Li H, Ramstein GP, Zhou S, Zhang X, Bao Z, Zhang Y, Song B, Zhou Y, Zhou Y, Gagnon E, Särkinen T, Knapp S, Zhang C, Städler T, Buckler ES, Huang S. Wu Y, et al. Among authors: zhou y, zhou s. Cell. 2023 May 25;186(11):2313-2328.e15. doi: 10.1016/j.cell.2023.04.008. Epub 2023 May 4. Cell. 2023. PMID: 37146612 Free article.
Genomic conservation of crop wild relatives: A case study of citrus.
Wang N, Cao S, Liu Z, Xiao H, Hu J, Xu X, Chen P, Ma Z, Ye J, Chai L, Guo W, Larkin RM, Xu Q, Morrell PL, Zhou Y, Deng X. Wang N, et al. Among authors: zhou y. PLoS Genet. 2023 Jun 20;19(6):e1010811. doi: 10.1371/journal.pgen.1010811. eCollection 2023 Jun. PLoS Genet. 2023. PMID: 37339133 Free PMC article.
Pangenome analysis reveals genomic variations associated with domestication traits in broomcorn millet.
Chen J, Liu Y, Liu M, Guo W, Wang Y, He Q, Chen W, Liao Y, Zhang W, Gao Y, Dong K, Ren R, Yang T, Zhang L, Qi M, Li Z, Zhao M, Wang H, Wang J, Qiao Z, Li H, Jiang Y, Liu G, Song X, Deng Y, Li H, Yan F, Dong Y, Li Q, Li T, Yang W, Cui J, Wang H, Zhou Y, Zhang X, Jia G, Lu P, Zhi H, Tang S, Diao X. Chen J, et al. Among authors: zhou y. Nat Genet. 2023 Dec;55(12):2243-2254. doi: 10.1038/s41588-023-01571-z. Epub 2023 Nov 30. Nat Genet. 2023. PMID: 38036791 Free PMC article.
A super pan-genomic landscape of rice.
Shang L, Li X, He H, Yuan Q, Song Y, Wei Z, Lin H, Hu M, Zhao F, Zhang C, Li Y, Gao H, Wang T, Liu X, Zhang H, Zhang Y, Cao S, Yu X, Zhang B, Zhang Y, Tan Y, Qin M, Ai C, Yang Y, Zhang B, Hu Z, Wang H, Lv Y, Wang Y, Ma J, Wang Q, Lu H, Wu Z, Liu S, Sun Z, Zhang H, Guo L, Li Z, Zhou Y, Li J, Zhu Z, Xiong G, Ruan J, Qian Q. Shang L, et al. Among authors: zhou y. Cell Res. 2022 Oct;32(10):878-896. doi: 10.1038/s41422-022-00685-z. Epub 2022 Jul 12. Cell Res. 2022. PMID: 35821092 Free PMC article.
Adaptive and maladaptive introgression in grapevine domestication.
Xiao H, Liu Z, Wang N, Long Q, Cao S, Huang G, Liu W, Peng Y, Riaz S, Walker AM, Gaut BS, Zhou Y. Xiao H, et al. Among authors: zhou y. Proc Natl Acad Sci U S A. 2023 Jun 13;120(24):e2222041120. doi: 10.1073/pnas.2222041120. Epub 2023 Jun 5. Proc Natl Acad Sci U S A. 2023. PMID: 37276420 Free PMC article.
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