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Towards the detection of copy number variation from single sperm sequencing in cattle.
Yang L, Gao Y, Oswalt A, Fang L, Boschiero C, Neupane M, Sattler CG, Li CJ, Seroussi E, Xu L, Yang L, Li L, Zhang H, Rosen BD, Van Tassell CP, Zhou Y, Ma L, Liu GE. Yang L, et al. Among authors: zhou y. BMC Genomics. 2022 Mar 17;23(1):215. doi: 10.1186/s12864-022-08441-8. BMC Genomics. 2022. PMID: 35300589 Free PMC article.
Genome-wide recombination map construction from single sperm sequencing in cattle.
Yang L, Gao Y, Li M, Park KE, Liu S, Kang X, Liu M, Oswalt A, Fang L, Telugu BP, Sattler CG, Li CJ, Cole JB, Seroussi E, Xu L, Yang L, Zhou Y, Li L, Zhang H, Rosen BD, Van Tassell CP, Ma L, Liu GE. Yang L, et al. Among authors: zhou y. BMC Genomics. 2022 Mar 5;23(1):181. doi: 10.1186/s12864-022-08415-w. BMC Genomics. 2022. PMID: 35247961 Free PMC article.
Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary history.
Zhou Y, Yang L, Han X, Han J, Hu Y, Li F, Xia H, Peng L, Boschiero C, Rosen BD, Bickhart DM, Zhang S, Guo A, Van Tassell CP, Smith TPL, Yang L, Liu GE. Zhou Y, et al. Genome Res. 2022 Aug 17;32(8):1585-601. doi: 10.1101/gr.276550.122. Online ahead of print. Genome Res. 2022. PMID: 35977842 Free PMC article.
Large-insert genome analysis technology detects structural variation in Pseudomonas aeruginosa clinical strains from cystic fibrosis patients.
Hayden HS, Gillett W, Saenphimmachak C, Lim R, Zhou Y, Jacobs MA, Chang J, Rohmer L, D'Argenio DA, Palmieri A, Levy R, Haugen E, Wong GK, Brittnacher MJ, Burns JL, Miller SI, Olson MV, Kaul R. Hayden HS, et al. Among authors: zhou y. Genomics. 2008 Jun;91(6):530-7. doi: 10.1016/j.ygeno.2008.02.005. Epub 2008 Apr 29. Genomics. 2008. PMID: 18445516 Free PMC article.
Evolutionary and biomedical insights from a marmoset diploid genome assembly.
Yang C, Zhou Y, Marcus S, Formenti G, Bergeron LA, Song Z, Bi X, Bergman J, Rousselle MMC, Zhou C, Zhou L, Deng Y, Fang M, Xie D, Zhu Y, Tan S, Mountcastle J, Haase B, Balacco J, Wood J, Chow W, Rhie A, Pippel M, Fabiszak MM, Koren S, Fedrigo O, Freiwald WA, Howe K, Yang H, Phillippy AM, Schierup MH, Jarvis ED, Zhang G. Yang C, et al. Among authors: zhou y, zhou c, zhou l. Nature. 2021 Jun;594(7862):227-233. doi: 10.1038/s41586-021-03535-x. Epub 2021 Apr 28. Nature. 2021. PMID: 33910227 Free PMC article.
Towards complete and error-free genome assemblies of all vertebrate species.
Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, Thibaud-Nissen F, Haggerty L, Bista I, Smith M, Haase B, Mountcastle J, Winkler S, Paez S, Howard J, Vernes SC, Lama TM, Grutzner F, Warren WC, Balakrishnan CN, Burt D, George JM, Biegler MT, Iorns D, Digby A, Eason D, Robertson B, Edwards T, Wilkinson M, Turner G, Meyer A, Kautt AF, Franchini P, Detrich HW 3rd, Svardal H, Wagner M, Naylor GJP, Pippel M, Malinsky M, Mooney M, Simbirsky M, Hannigan BT, Pesout T, Houck M, Misuraca A, Kingan SB, Hall R, Kronenberg Z, Sović I, Dunn C, Ning Z, Hastie A, Lee J, Selvaraj S, Green RE, Putnam NH, Gut I, Ghurye J, Garrison E, Sims Y, Collins J, Pelan S, Torrance J, Tracey A, Wood J, Dagnew RE, Guan D, London SE, Clayton DF, Mello CV, Friedrich SR, Lovell PV, Osipova E, Al-Ajli FO, Secomandi S, Kim H, Theofanopoulou C, Hiller M, Zhou Y, Harris RS, Makova KD, Medvedev P, Hoffman J, Masterson P, Clark K, Martin F, Howe K, Flicek P, Walenz BP, Kwak W, Clawson H, Diekhans M, Nassar L, Paten B, Kraus RHS, Crawford AJ, Gilbert MTP, Zhang G, Venkatesh B, Murphy RW, Koepfli KP, Shapiro B,… See abstract for full author list ➔ Rhie A, et al. Among authors: zhou y. Nature. 2021 Apr;592(7856):737-746. doi: 10.1038/s41586-021-03451-0. Epub 2021 Apr 28. Nature. 2021. PMID: 33911273 Free PMC article.
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