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Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project.
Dekker J, Alber F, Aufmkolk S, Beliveau BJ, Bruneau BG, Belmont AS, Bintu L, Boettiger A, Calandrelli R, Disteche CM, Gilbert DM, Gregor T, Hansen AS, Huang B, Huangfu D, Kalhor R, Leslie CS, Li W, Li Y, Ma J, Noble WS, Park PJ, Phillips-Cremins JE, Pollard KS, Rafelski SM, Ren B, Ruan Y, Shav-Tal Y, Shen Y, Shendure J, Shu X, Strambio-De-Castillia C, Vertii A, Zhang H, Zhong S. Dekker J, et al. Among authors: zhong s. Mol Cell. 2023 Aug 3;83(15):2624-2640. doi: 10.1016/j.molcel.2023.06.018. Epub 2023 Jul 6. Mol Cell. 2023. PMID: 37419111 Review.
The 4D nucleome project.
Dekker J, Belmont AS, Guttman M, Leshyk VO, Lis JT, Lomvardas S, Mirny LA, O'Shea CC, Park PJ, Ren B, Politz JCR, Shendure J, Zhong S; 4D Nucleome Network. Dekker J, et al. Among authors: zhong s. Nature. 2017 Sep 13;549(7671):219-226. doi: 10.1038/nature23884. Nature. 2017. PMID: 28905911 Free PMC article.
Corrigendum: The 4D nucleome project.
Dekker J, Belmont AS, Guttman M, Leshyk VO, Lis JT, Lomvardas S, Mirny LA, O'Shea CC, Park PJ, Ren B, Politz JCR, Shendure J, Zhong S; 4D Nucleome Network. Dekker J, et al. Among authors: zhong s. Nature. 2017 Dec 14;552(7684):278. doi: 10.1038/nature24667. Epub 2017 Nov 22. Nature. 2017. PMID: 29168505
GITAR: An Open Source Tool for Analysis and Visualization of Hi-C Data.
Calandrelli R, Wu Q, Guan J, Zhong S. Calandrelli R, et al. Among authors: zhong s. Genomics Proteomics Bioinformatics. 2018 Oct;16(5):365-372. doi: 10.1016/j.gpb.2018.06.006. Epub 2018 Dec 13. Genomics Proteomics Bioinformatics. 2018. PMID: 30553884 Free PMC article.
Reply to Verwilt et al.: Experimental evidence against DNA contamination in SILVER-seq.
Zhou Z, Wu Q, Yan Z, Zheng H, Chen CJ, Liu Y, Qi Z, Calandrelli R, Chen Z, Chien S, Su HI, Zhong S. Zhou Z, et al. Among authors: zhong s. Proc Natl Acad Sci U S A. 2020 Aug 11;117(32):18937-18938. doi: 10.1073/pnas.2008585117. Proc Natl Acad Sci U S A. 2020. PMID: 32788395 Free PMC article. No abstract available.
4,222 results