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Analytical "bake-off" of whole genome sequencing quality for the Genome Russia project using a small cohort for autoimmune hepatitis.
Zhernakova DV, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Dobrynin P, Yurchenko AA, Shimansky V, Shcherbakova IV, Glotov AS, Valle DL, Tang M, Shin E, Schwarz KB, O'Brien SJ. Zhernakova DV, et al. PLoS One. 2018 Jul 11;13(7):e0200423. doi: 10.1371/journal.pone.0200423. eCollection 2018. PLoS One. 2018. PMID: 29995946 Free PMC article.
Genome-wide sequence analyses of ethnic populations across Russia.
Zhernakova DV, Brukhin V, Malov S, Oleksyk TK, Koepfli KP, Zhuk A, Dobrynin P, Kliver S, Cherkasov N, Tamazian G, Rotkevich M, Krasheninnikova K, Evsyukov I, Sidorov S, Gorbunova A, Chernyaeva E, Shevchenko A, Kolchanova S, Komissarov A, Simonov S, Antonik A, Logachev A, Polev DE, Pavlova OA, Glotov AS, Ulantsev V, Noskova E, Davydova TK, Sivtseva TM, Limborska S, Balanovsky O, Osakovsky V, Novozhilov A, Puzyrev V, O'Brien SJ. Zhernakova DV, et al. Genomics. 2020 Jan;112(1):442-458. doi: 10.1016/j.ygeno.2019.03.007. Epub 2019 Mar 19. Genomics. 2020. PMID: 30902755 Free article.
Draft de novo Genome Assembly of the Elusive Jaguarundi, Puma yagouaroundi.
Tamazian G, Dobrynin P, Zhuk A, Zhernakova DV, Perelman PL, Serdyukova NA, Graphodatsky AS, Komissarov A, Kliver S, Cherkasov N, Scott AF, Mohr DW, Koepfli KP, O'Brien SJ, Krasheninnikova K. Tamazian G, et al. Among authors: zhernakova dv. J Hered. 2021 Nov 1;112(6):540-548. doi: 10.1093/jhered/esab036. J Hered. 2021. PMID: 34146095 Free PMC article.
Genome-wide association study reveals genetic variants associated with HIV-1C infection in a Botswana study population.
Shevchenko AK, Zhernakova DV, Malov SV, Komissarov A, Kolchanova SM, Tamazian G, Antonik A, Cherkasov N, Kliver S, Turenko A, Rotkevich M, Evsyukov I, Vlahov D, Thami PK, Gaseitsiwe S, Novitsky V, Essex M, O'Brien SJ. Shevchenko AK, et al. Among authors: zhernakova dv. Proc Natl Acad Sci U S A. 2021 Nov 23;118(47):e2107830118. doi: 10.1073/pnas.2107830118. Proc Natl Acad Sci U S A. 2021. PMID: 34782459 Free PMC article.
New Gene Variants Associated with the Risk of Chronic HBV Infection.
Fan M, Wang J, Wang S, Li T, Pan H, Liu H, Xu H, Zhernakova DV, O'Brien SJ, Feng Z, Chang L, Dai E, Lu J, Xi H, Yu Y, Zhang J, Wang B, Zeng Z. Fan M, et al. Among authors: zhernakova dv. Virol Sin. 2020 Aug;35(4):378-387. doi: 10.1007/s12250-020-00200-x. Epub 2020 Apr 15. Virol Sin. 2020. PMID: 32297155 Free PMC article.
Identified OAS3 gene variants associated with coexistence of HBsAg and anti-HBs in chronic HBV infection.
Wang S, Wang J, Fan MJ, Li TY, Pan H, Wang X, Liu HK, Lin QF, Zhang JG, Guan LP, Zhernakova DV, O'Brien SJ, Feng ZR, Chang L, Dai EH, Lu JH, Xi HL, Zeng Z, Yu YY, Wang BB. Wang S, et al. Among authors: zhernakova dv. J Viral Hepat. 2018 Aug;25(8):904-910. doi: 10.1111/jvh.12899. Epub 2018 May 29. J Viral Hepat. 2018. PMID: 29582521 Free PMC article.
DeepSAGE reveals genetic variants associated with alternative polyadenylation and expression of coding and non-coding transcripts.
Zhernakova DV, de Klerk E, Westra HJ, Mastrokolias A, Amini S, Ariyurek Y, Jansen R, Penninx BW, Hottenga JJ, Willemsen G, de Geus EJ, Boomsma DI, Veldink JH, van den Berg LH, Wijmenga C, den Dunnen JT, van Ommen GJ, 't Hoen PA, Franke L. Zhernakova DV, et al. PLoS Genet. 2013 Jun;9(6):e1003594. doi: 10.1371/journal.pgen.1003594. Epub 2013 Jun 20. PLoS Genet. 2013. PMID: 23818875 Free PMC article.
Human disease-associated genetic variation impacts large intergenic non-coding RNA expression.
Kumar V, Westra HJ, Karjalainen J, Zhernakova DV, Esko T, Hrdlickova B, Almeida R, Zhernakova A, Reinmaa E, Võsa U, Hofker MH, Fehrmann RS, Fu J, Withoff S, Metspalu A, Franke L, Wijmenga C. Kumar V, et al. Among authors: zhernakova dv, zhernakova a. PLoS Genet. 2013;9(1):e1003201. doi: 10.1371/journal.pgen.1003201. Epub 2013 Jan 17. PLoS Genet. 2013. PMID: 23341781 Free PMC article.
61 results