Zheng R - Search Results

1

Cistrome-GO: a web server for functional enrichment analysis of transcription factor ChIP-seq peaks.

Li S, Wan C, Zheng R, Fan J, Dong X, Meyer CA, Liu XS. Li S, et al. Among authors: zheng r. Nucleic Acids Res. 2019 Jul 2;47(W1):W206-W211. doi: 10.1093/nar/gkz332. Nucleic Acids Res. 2019. PMID: 31053864 Free PMC article.

2

Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse.

Mei S, Qin Q, Wu Q, Sun H, Zheng R, Zang C, Zhu M, Wu J, Shi X, Taing L, Liu T, Brown M, Meyer CA, Liu XS. Mei S, et al. Among authors: zheng r. Nucleic Acids Res. 2017 Jan 4;45(D1):D658-D662. doi: 10.1093/nar/gkw983. Epub 2016 Oct 26. Nucleic Acids Res. 2017. PMID: 27789702 Free PMC article.

3

Cistrome Cancer: A Web Resource for Integrative Gene Regulation Modeling in Cancer.

Mei S, Meyer CA, Zheng R, Qin Q, Wu Q, Jiang P, Li B, Shi X, Wang B, Fan J, Shih C, Brown M, Zang C, Liu XS. Mei S, et al. Among authors: zheng r. Cancer Res. 2017 Nov 1;77(21):e19-e22. doi: 10.1158/0008-5472.CAN-17-0327. Cancer Res. 2017. PMID: 29092931 Free PMC article.

4

Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis.

Zheng R, Wan C, Mei S, Qin Q, Wu Q, Sun H, Chen CH, Brown M, Zhang X, Meyer CA, Liu XS. Zheng R, et al. Nucleic Acids Res. 2019 Jan 8;47(D1):D729-D735. doi: 10.1093/nar/gky1094. Nucleic Acids Res. 2019. PMID: 30462313 Free PMC article.

5

Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data.

Qin Q, Fan J, Zheng R, Wan C, Mei S, Wu Q, Sun H, Brown M, Zhang J, Meyer CA, Liu XS. Qin Q, et al. Among authors: zheng r. Genome Biol. 2020 Feb 7;21(1):32. doi: 10.1186/s13059-020-1934-6. Genome Biol. 2020. PMID: 32033573 Free PMC article.

6

Determinants of transcription factor regulatory range.

Chen CH, Zheng R, Tokheim C, Dong X, Fan J, Wan C, Tang Q, Brown M, Liu JS, Meyer CA, Liu XS. Chen CH, et al. Among authors: zheng r. Nat Commun. 2020 May 18;11(1):2472. doi: 10.1038/s41467-020-16106-x. Nat Commun. 2020. PMID: 32424124 Free PMC article.

7

TISCH: a comprehensive web resource enabling interactive single-cell transcriptome visualization of tumor microenvironment.

Sun D, Wang J, Han Y, Dong X, Ge J, Zheng R, Shi X, Wang B, Li Z, Ren P, Sun L, Yan Y, Zhang P, Zhang F, Li T, Wang C. Sun D, et al. Among authors: zheng r. Nucleic Acids Res. 2021 Jan 8;49(D1):D1420-D1430. doi: 10.1093/nar/gkaa1020. Nucleic Acids Res. 2021. PMID: 33179754 Free PMC article.

8

ViMIC: a database of human disease-related virus mutations, integration sites and cis-effects.

Wang Y, Tong Y, Zhang Z, Zheng R, Huang D, Yang J, Zong H, Tan F, Xie Y, Huang H, Zhang X. Wang Y, et al. Among authors: zheng r. Nucleic Acids Res. 2022 Jan 7;50(D1):D918-D927. doi: 10.1093/nar/gkab779. Nucleic Acids Res. 2022. PMID: 34500462 Free PMC article.

9

IGSF8 is an innate immune checkpoint and cancer immunotherapy target.

Li Y, Wu X, Sheng C, Liu H, Liu H, Tang Y, Liu C, Ding Q, Xie B, Xiao X, Zheng R, Yu Q, Guo Z, Ma J, Wang J, Gao J, Tian M, Wang W, Zhou J, Jiang L, Gu M, Shi S, Paull M, Yang G, Yang W, Landau S, Bao X, Hu X, Liu XS, Xiao T. Li Y, et al. Among authors: zheng r. Cell. 2024 Apr 18:S0092-8674(24)00355-6. doi: 10.1016/j.cell.2024.03.039. Online ahead of print. Cell. 2024. PMID: 38657602

10

GIDB: a knowledge database for the automated curation and multidimensional analysis of molecular signatures in gastrointestinal cancer.

Wang Y, Wang Y, Wang S, Tong Y, Jin L, Zong H, Zheng R, Yang J, Zhang Z, Ouyang E, Zhou M, Zhang X. Wang Y, et al. Among authors: zheng r. Database (Oxford). 2019 Jan 1;2019:baz051. doi: 10.1093/database/baz051. Database (Oxford). 2019. PMID: 31089686 Free PMC article.

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