Zhao Y - Search Results

1

Benchmarking spatial clustering methods with spatially resolved transcriptomics data.

Yuan Z, Zhao F, Lin S, Zhao Y, Yao J, Cui Y, Zhang XY, Zhao Y. Yuan Z, et al. Among authors: zhao y, zhao f. Nat Methods. 2024 Apr;21(4):712-722. doi: 10.1038/s41592-024-02215-8. Epub 2024 Mar 15. Nat Methods. 2024. PMID: 38491270

2

SODB facilitates comprehensive exploration of spatial omics data.

Yuan Z, Pan W, Zhao X, Zhao F, Xu Z, Li X, Zhao Y, Zhang MQ, Yao J. Yuan Z, et al. Among authors: zhao x, zhao y, zhao f. Nat Methods. 2023 Mar;20(3):387-399. doi: 10.1038/s41592-023-01773-7. Epub 2023 Feb 16. Nat Methods. 2023. PMID: 36797409

3

Publisher Correction: SODB facilitates comprehensive exploration of spatial omics data.

Yuan Z, Pan W, Zhao X, Zhao F, Xu Z, Li X, Zhao Y, Zhang MQ, Yao J. Yuan Z, et al. Among authors: zhao x, zhao y, zhao f. Nat Methods. 2023 Apr;20(4):623. doi: 10.1038/s41592-023-01844-9. Nat Methods. 2023. PMID: 36932185 No abstract available.

4

Streamlining spatial omics data analysis with Pysodb.

Lin S, Zhao F, Wu Z, Yao J, Zhao Y, Yuan Z. Lin S, et al. Among authors: zhao y, zhao f. Nat Protoc. 2024 Mar;19(3):831-895. doi: 10.1038/s41596-023-00925-5. Epub 2023 Dec 22. Nat Protoc. 2024. PMID: 38135744 Review.

5

Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression.

Deng W, Zhu X, Skogerbø G, Zhao Y, Fu Z, Wang Y, He H, Cai L, Sun H, Liu C, Li B, Bai B, Wang J, Jia D, Sun S, He H, Cui Y, Wang Y, Bu D, Chen R. Deng W, et al. Among authors: zhao y. Genome Res. 2006 Jan;16(1):20-9. doi: 10.1101/gr.4139206. Epub 2005 Dec 12. Genome Res. 2006. PMID: 16344563 Free PMC article.

6

DeepFusion: A deep bimodal information fusion network for unraveling protein-RNA interactions using in vivo RNA structures.

Qiao Y, Yang R, Liu Y, Chen J, Zhao L, Huo P, Wang Z, Bu D, Wu Y, Zhao Y. Qiao Y, et al. Among authors: zhao y, zhao l. Comput Struct Biotechnol J. 2023 Dec 30;23:617-625. doi: 10.1016/j.csbj.2023.12.040. eCollection 2024 Dec. Comput Struct Biotechnol J. 2023. PMID: 38274994 Free PMC article.

7

SupCAM: Chromosome cluster types identification using supervised contrastive learning with category-variant augmentation and self-margin loss.

Luo C, Wu Y, Zhao Y. Luo C, et al. Among authors: zhao y. Front Genet. 2023 Feb 15;14:1109269. doi: 10.3389/fgene.2023.1109269. eCollection 2023. Front Genet. 2023. PMID: 36873945 Free PMC article.

8

AlphaFold2 and its applications in the fields of biology and medicine.

Yang Z, Zeng X, Zhao Y, Chen R. Yang Z, et al. Among authors: zhao y. Signal Transduct Target Ther. 2023 Mar 14;8(1):115. doi: 10.1038/s41392-023-01381-z. Signal Transduct Target Ther. 2023. PMID: 36918529 Free PMC article. Review.

9

Comprehensive landscape of resistance mechanisms for neoadjuvant therapy in esophageal squamous cell carcinoma by single-cell transcriptomics.

Yang Y, Li Y, Yu H, Ding Z, Chen L, Zeng X, He S, Liao Q, Zhao Y, Yuan Y. Yang Y, et al. Among authors: zhao y. Signal Transduct Target Ther. 2023 Aug 11;8(1):298. doi: 10.1038/s41392-023-01518-0. Signal Transduct Target Ther. 2023. PMID: 37563120 Free PMC article. No abstract available.

10

The hypoxia-associated genes in immune infiltration and treatment options of lung adenocarcinoma.

Liu L, Han L, Dong L, He Z, Gao K, Chen X, Guo JC, Zhao Y. Liu L, et al. Among authors: zhao y. PeerJ. 2023 Aug 7;11:e15621. doi: 10.7717/peerj.15621. eCollection 2023. PeerJ. 2023. PMID: 37576511 Free PMC article.

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