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BS-SNPer: SNP calling in bisulfite-seq data.
Gao S, Zou D, Mao L, Liu H, Song P, Chen Y, Zhao S, Gao C, Li X, Gao Z, Fang X, Yang H, Ørntoft TF, Sørensen KD, Bolund L. Gao S, et al. Among authors: zhao s. Bioinformatics. 2015 Dec 15;31(24):4006-8. doi: 10.1093/bioinformatics/btv507. Epub 2015 Aug 28. Bioinformatics. 2015. PMID: 26319221 Free PMC article.
SMAP: a streamlined methylation analysis pipeline for bisulfite sequencing.
Gao S, Zou D, Mao L, Zhou Q, Jia W, Huang Y, Zhao S, Chen G, Wu S, Li D, Xia F, Chen H, Chen M, Ørntoft TF, Bolund L, Sørensen KD. Gao S, et al. Among authors: zhao s. Gigascience. 2015 Jul 1;4:29. doi: 10.1186/s13742-015-0070-9. eCollection 2015. Gigascience. 2015. PMID: 26140213 Free PMC article. Review.
BS-virus-finder: virus integration calling using bisulfite sequencing data.
Gao S, Hu X, Xu F, Gao C, Xiong K, Zhao X, Chen H, Zhao S, Wang M, Fu D, Zhao X, Bai J, Mao L, Li B, Wu S, Wang J, Li S, Yang H, Bolund L, Pedersen CNS. Gao S, et al. Among authors: zhao x, zhao s. Gigascience. 2018 Jan 1;7(1):1-7. doi: 10.1093/gigascience/gix123. Gigascience. 2018. PMID: 29267855 Free PMC article.
The sequence and de novo assembly of the giant panda genome.
Li R, Fan W, Tian G, Zhu H, He L, Cai J, Huang Q, Cai Q, Li B, Bai Y, Zhang Z, Zhang Y, Wang W, Li J, Wei F, Li H, Jian M, Li J, Zhang Z, Nielsen R, Li D, Gu W, Yang Z, Xuan Z, Ryder OA, Leung FC, Zhou Y, Cao J, Sun X, Fu Y, Fang X, Guo X, Wang B, Hou R, Shen F, Mu B, Ni P, Lin R, Qian W, Wang G, Yu C, Nie W, Wang J, Wu Z, Liang H, Min J, Wu Q, Cheng S, Ruan J, Wang M, Shi Z, Wen M, Liu B, Ren X, Zheng H, Dong D, Cook K, Shan G, Zhang H, Kosiol C, Xie X, Lu Z, Zheng H, Li Y, Steiner CC, Lam TT, Lin S, Zhang Q, Li G, Tian J, Gong T, Liu H, Zhang D, Fang L, Ye C, Zhang J, Hu W, Xu A, Ren Y, Zhang G, Bruford MW, Li Q, Ma L, Guo Y, An N, Hu Y, Zheng Y, Shi Y, Li Z, Liu Q, Chen Y, Zhao J, Qu N, Zhao S, Tian F, Wang X, Wang H, Xu L, Liu X, Vinar T, Wang Y, Lam TW, Yiu SM, Liu S, Zhang H, Li D, Huang Y, Wang X, Yang G, Jiang Z, Wang J, Qin N, Li L, Li J, Bolund L, Kristiansen K, Wong GK, Olson M, Zhang X, Li S, Yang H, Wang J, Wang J. Li R, et al. Among authors: zhao j, zhao s. Nature. 2010 Jan 21;463(7279):311-7. doi: 10.1038/nature08696. Epub 2009 Dec 13. Nature. 2010. PMID: 20010809 Free PMC article.
Origin and evolution of qingke barley in Tibet.
Zeng X, Guo Y, Xu Q, Mascher M, Guo G, Li S, Mao L, Liu Q, Xia Z, Zhou J, Yuan H, Tai S, Wang Y, Wei Z, Song L, Zha S, Li S, Tang Y, Bai L, Zhuang Z, He W, Zhao S, Fang X, Gao Q, Yin Y, Wang J, Yang H, Zhang J, Henry RJ, Stein N, Tashi N. Zeng X, et al. Among authors: zhao s. Nat Commun. 2018 Dec 21;9(1):5433. doi: 10.1038/s41467-018-07920-5. Nat Commun. 2018. PMID: 30575759 Free PMC article.
The draft genome of Tibetan hulless barley reveals adaptive patterns to the high stressful Tibetan Plateau.
Zeng X, Long H, Wang Z, Zhao S, Tang Y, Huang Z, Wang Y, Xu Q, Mao L, Deng G, Yao X, Li X, Bai L, Yuan H, Pan Z, Liu R, Chen X, WangMu Q, Chen M, Yu L, Liang J, DunZhu D, Zheng Y, Yu S, LuoBu Z, Guang X, Li J, Deng C, Hu W, Chen C, TaBa X, Gao L, Lv X, Abu YB, Fang X, Nevo E, Yu M, Wang J, Tashi N. Zeng X, et al. Among authors: zhao s. Proc Natl Acad Sci U S A. 2015 Jan 27;112(4):1095-100. doi: 10.1073/pnas.1423628112. Epub 2015 Jan 12. Proc Natl Acad Sci U S A. 2015. PMID: 25583503 Free PMC article.
Draft genome sequence of ramie, Boehmeria nivea (L.) Gaudich.
Luan MB, Jian JB, Chen P, Chen JH, Chen JH, Gao Q, Gao G, Zhou JH, Chen KM, Guang XM, Chen JK, Zhang QQ, Wang XF, Fang L, Sun ZM, Bai MZ, Fang XD, Zhao SC, Xiong HP, Yu CM, Zhu AG. Luan MB, et al. Mol Ecol Resour. 2018 May;18(3):639-645. doi: 10.1111/1755-0998.12766. Epub 2018 Mar 8. Mol Ecol Resour. 2018. PMID: 29423997
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