Zhao J - Search Results

1

Predicting the Kinetics of RNA Oligonucleotides Using Markov State Models.

Pinamonti G, Zhao J, Condon DE, Paul F, Noè F, Turner DH, Bussi G. Pinamonti G, et al. Among authors: zhao j. J Chem Theory Comput. 2017 Feb 14;13(2):926-934. doi: 10.1021/acs.jctc.6b00982. Epub 2017 Jan 5. J Chem Theory Comput. 2017. PMID: 28001394 Free PMC article.

2

Nuclear Magnetic Resonance of Single-Stranded RNAs and DNAs of CAAU and UCAAUC as Benchmarks for Molecular Dynamics Simulations.

Zhao J, Kennedy SD, Berger KD, Turner DH. Zhao J, et al. J Chem Theory Comput. 2020 Mar 10;16(3):1968-1984. doi: 10.1021/acs.jctc.9b00912. Epub 2020 Feb 17. J Chem Theory Comput. 2020. PMID: 31904966

3

Nuclear Magnetic Resonance Spectra and AMBER OL3 and ROC-RNA Simulations of UCUCGU Reveal Force Field Strengths and Weaknesses for Single-Stranded RNA.

Zhao J, Kennedy SD, Turner DH. Zhao J, et al. J Chem Theory Comput. 2022 Feb 8;18(2):1241-1254. doi: 10.1021/acs.jctc.1c00643. Epub 2022 Jan 6. J Chem Theory Comput. 2022. PMID: 34990548

4

Nuclear Magnetic Resonance Structure of an 8 × 8 Nucleotide RNA Internal Loop Flanked on Each Side by Three Watson-Crick Pairs and Comparison to Three-Dimensional Predictions.

Kauffmann AD, Kennedy SD, Zhao J, Turner DH. Kauffmann AD, et al. Among authors: zhao j. Biochemistry. 2017 Jul 25;56(29):3733-3744. doi: 10.1021/acs.biochem.7b00201. Epub 2017 Jul 12. Biochemistry. 2017. PMID: 28700212 Free PMC article.

5

Physics-based all-atom modeling of RNA energetics and structure.

Smith LG, Zhao J, Mathews DH, Turner DH. Smith LG, et al. Among authors: zhao j. Wiley Interdiscip Rev RNA. 2017 Sep;8(5):10.1002/wrna.1422. doi: 10.1002/wrna.1422. Wiley Interdiscip Rev RNA. 2017. PMID: 28815951 Free PMC article. Review.

6

Crystal structure of a poly(rA) staggered zipper at acidic pH: evidence that adenine N1 protonation mediates parallel double helix formation.

Gleghorn ML, Zhao J, Turner DH, Maquat LE. Gleghorn ML, et al. Among authors: zhao j. Nucleic Acids Res. 2016 Sep 30;44(17):8417-24. doi: 10.1093/nar/gkw526. Epub 2016 Jun 10. Nucleic Acids Res. 2016. PMID: 27288442 Free PMC article.

7

Accurate geometrical restraints for Watson-Crick base pairs.

Gilski M, Zhao J, Kowiel M, Brzezinski D, Turner DH, Jaskolski M. Gilski M, et al. Among authors: zhao j. Acta Crystallogr B Struct Sci Cryst Eng Mater. 2019 Apr 1;75(Pt 2):235-245. doi: 10.1107/S2052520619002002. Epub 2019 Mar 27. Acta Crystallogr B Struct Sci Cryst Eng Mater. 2019. PMID: 32830749 Free PMC article.

8

Exosome-mimetic vesicles derived from fibroblasts carrying matrine for wound healing.

Zhang X, Huang J, Zhao J, Li L, Miao F, Zhang T, Chen Z, Zhou X, Tai Z, Zhu Q. Zhang X, et al. Among authors: zhao j. Burns Trauma. 2024 May 15;12:tkae015. doi: 10.1093/burnst/tkae015. eCollection 2024. Burns Trauma. 2024. PMID: 38752203 Free PMC article.

9

Correction: Expanded graphite incorporated with Li₄Ti₅O₁₂ nanoparticles as a high-rate lithium-ion battery anode.

Zhao J, Zhu X, Zhang W, Qiu J, Zhai F, Zhang H, Cao G, Gao S, Ding F, Xiang Y. Zhao J, et al. RSC Adv. 2024 May 15;14(22):15776. doi: 10.1039/d4ra90055c. eCollection 2024 May 10. RSC Adv. 2024. PMID: 38752157 Free PMC article.

10

Pyroptosis: The Determinator of Cell Death and Fate in Acute Kidney Injury.

Xiong J, Zhao J. Xiong J, et al. Among authors: zhao j. Kidney Dis (Basel). 2023 Dec 22;10(2):118-131. doi: 10.1159/000535894. eCollection 2024 Apr. Kidney Dis (Basel). 2023. PMID: 38751798 Free PMC article. Review.

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