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Noncoding mutations cause super-enhancer retargeting resulting in protein synthesis dysregulation during B cell lymphoma progression.
Leeman-Neill RJ, Song D, Bizarro J, Wacheul L, Rothschild G, Singh S, Yang Y, Sarode AY, Gollapalli K, Wu L, Zhang W, Chen Y, Lauring MC, Whisenant DE, Bhavsar S, Lim J, Swerdlow SH, Bhagat G, Zhao Q, Berchowitz LE, Lafontaine DLJ, Wang J, Basu U. Leeman-Neill RJ, et al. Among authors: zhang w. Nat Genet. 2023 Dec;55(12):2160-2174. doi: 10.1038/s41588-023-01561-1. Epub 2023 Dec 4. Nat Genet. 2023. PMID: 38049665 Free PMC article.
m6A RNA modification regulates innate lymphoid cell responses in a lineage-specific manner.
Zhang Y, Zhang W, Zhao J, Ito T, Jin J, Aparicio AO, Zhou J, Guichard V, Fang Y, Que J, Urban JF Jr, Hanna JH, Ghosh S, Wu X, Ding L, Basu U, Huang Y. Zhang Y, et al. Among authors: zhang w. Nat Immunol. 2023 Aug;24(8):1256-1264. doi: 10.1038/s41590-023-01548-4. Epub 2023 Jul 3. Nat Immunol. 2023. PMID: 37400674 Free PMC article.
Proteasomal Regulation of Mammalian SPT16 in Controlling Transcription.
Kaja A, Adhikari A, Karmakar S, Zhang W, Rothschild G, Basu U, Batra SK, Davie JK, Bhaumik SR. Kaja A, et al. Among authors: zhang w. Mol Cell Biol. 2021 Mar 24;41(4):e00452-20. doi: 10.1128/MCB.00452-20. Print 2021 Mar 24. Mol Cell Biol. 2021. PMID: 33526453 Free PMC article.
A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells.
Lai WKM, Mariani L, Rothschild G, Smith ER, Venters BJ, Blanda TR, Kuntala PK, Bocklund K, Mairose J, Dweikat SN, Mistretta K, Rossi MJ, James D, Anderson JT, Phanor SK, Zhang W, Zhao Z, Shah AP, Novitzky K, McAnarney E, Keogh MC, Shilatifard A, Basu U, Bulyk ML, Pugh BF. Lai WKM, et al. Among authors: zhang w. Genome Res. 2021 Sep;31(9):1663-1679. doi: 10.1101/gr.275472.121. Epub 2021 Aug 23. Genome Res. 2021. PMID: 34426512 Free PMC article.
Nuclear Proximity of Mtr4 to RNA Exosome Restricts DNA Mutational Asymmetry.
Lim J, Giri PK, Kazadi D, Laffleur B, Zhang W, Grinstein V, Pefanis E, Brown LM, Ladewig E, Martin O, Chen Y, Rabadan R, Boyer F, Rothschild G, Cogné M, Pinaud E, Deng H, Basu U. Lim J, et al. Among authors: zhang w. Cell. 2017 Apr 20;169(3):523-537.e15. doi: 10.1016/j.cell.2017.03.043. Cell. 2017. PMID: 28431250 Free PMC article.
3D Modeling of Esophageal Development using Human PSC-Derived Basal Progenitors Reveals a Critical Role for Notch Signaling.
Zhang Y, Yang Y, Jiang M, Huang SX, Zhang W, Al Alam D, Danopoulos S, Mori M, Chen YW, Balasubramanian R, Chuva de Sousa Lopes SM, Serra C, Bialecka M, Kim E, Lin S, Toste de Carvalho ALR, Riccio PN, Cardoso WV, Zhang X, Snoeck HW, Que J. Zhang Y, et al. Among authors: zhang w, zhang x. Cell Stem Cell. 2018 Oct 4;23(4):516-529.e5. doi: 10.1016/j.stem.2018.08.009. Epub 2018 Sep 20. Cell Stem Cell. 2018. PMID: 30244870 Free PMC article.
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