Zhang DY - Search Results

1

Single-Tube qPCR Detection and Quantitation of Hotspot Mutations Down to 0.01% Variant Allele Fraction.

Zhang K, Rodriguez L, Cheng LY, Wang M, Zhang DY. Zhang K, et al. Among authors: zhang dy. Anal Chem. 2022 Jan 18;94(2):934-943. doi: 10.1021/acs.analchem.1c03716. Epub 2021 Dec 21. Anal Chem. 2022. PMID: 34932306

2

Nucleic Acid Quantitation with Log-Linear Response Hybridization Probe Sets.

Wu LR, Fang JZ, Khodakov D, Zhang DY. Wu LR, et al. Among authors: zhang dy. ACS Sens. 2020 Jun 26;5(6):1604-1614. doi: 10.1021/acssensors.0c00052. Epub 2020 Jun 12. ACS Sens. 2020. PMID: 32475109 Free PMC article.

3

Low-level parental somatic mosaic SNVs in exomes from a large cohort of trios with diverse suspected Mendelian conditions.

Gambin T, Liu Q, Karolak JA, Grochowski CM, Xie NG, Wu LR, Yan YH, Cao Y, Coban Akdemir ZH, Wilson TA, Jhangiani SN, Chen E, Eng CM, Muzny D, Posey JE, Yang Y, Zhang DY, Shaw C, Liu P, Lupski JR, Stankiewicz P. Gambin T, et al. Among authors: zhang dy. Genet Med. 2020 Nov;22(11):1768-1776. doi: 10.1038/s41436-020-0897-z. Epub 2020 Jul 13. Genet Med. 2020. PMID: 32655138 Free PMC article.

4

High sensitivity sanger sequencing detection of BRAF mutations in metastatic melanoma FFPE tissue specimens.

Cheng LY, Haydu LE, Song P, Nie J, Tetzlaff MT, Kwong LN, Gershenwald JE, Davies MA, Zhang DY. Cheng LY, et al. Among authors: zhang dy. Sci Rep. 2021 Apr 27;11(1):9043. doi: 10.1038/s41598-021-88391-5. Sci Rep. 2021. PMID: 33907234 Free PMC article.

5

Selective multiplexed enrichment for the detection and quantitation of low-fraction DNA variants via low-depth sequencing.

Song P, Chen SX, Yan YH, Pinto A, Cheng LY, Dai P, Patel AA, Zhang DY. Song P, et al. Among authors: zhang dy. Nat Biomed Eng. 2021 Jul;5(7):690-701. doi: 10.1038/s41551-021-00713-0. Epub 2021 May 3. Nat Biomed Eng. 2021. PMID: 33941896 Free PMC article.

6

Confirming putative variants at ≤ 5% allele frequency using allele enrichment and Sanger sequencing.

Yan YH, Chen SX, Cheng LY, Rodriguez AY, Tang R, Cabrera K, Zhang DY. Yan YH, et al. Among authors: zhang dy. Sci Rep. 2021 Jun 2;11(1):11640. doi: 10.1038/s41598-021-91142-1. Sci Rep. 2021. PMID: 34079006 Free PMC article.

7

Highly multiplexed rapid DNA detection with single-nucleotide specificity via convective PCR in a portable device.

Khodakov D, Li J, Zhang JX, Zhang DY. Khodakov D, et al. Among authors: zhang dy, zhang jx. Nat Biomed Eng. 2021 Jul;5(7):702-712. doi: 10.1038/s41551-021-00755-4. Epub 2021 Jul 1. Nat Biomed Eng. 2021. PMID: 34211146

8

A deep learning model for predicting next-generation sequencing depth from DNA sequence.

Zhang JX, Yordanov B, Gaunt A, Wang MX, Dai P, Chen YJ, Zhang K, Fang JZ, Dalchau N, Li J, Phillips A, Zhang DY. Zhang JX, et al. Among authors: zhang dy, zhang k. Nat Commun. 2021 Jul 19;12(1):4387. doi: 10.1038/s41467-021-24497-8. Nat Commun. 2021. PMID: 34282137 Free PMC article.

9

Oncogene Concatenated Enriched Amplicon Nanopore Sequencing for rapid, accurate, and affordable somatic mutation detection.

Thirunavukarasu D, Cheng LY, Song P, Chen SX, Borad MJ, Kwong L, James P, Turner DJ, Zhang DY. Thirunavukarasu D, et al. Among authors: zhang dy. Genome Biol. 2021 Sep 6;22(1):227. doi: 10.1186/s13059-021-02449-1. Genome Biol. 2021. PMID: 34482832 Free PMC article.

10

Calibration-free NGS quantitation of mutations below 0.01% VAF.

Dai P, Wu LR, Chen SX, Wang MX, Cheng LY, Zhang JX, Hao P, Yao W, Zarka J, Issa GC, Kwong L, Zhang DY. Dai P, et al. Among authors: zhang dy, zhang jx. Nat Commun. 2021 Oct 21;12(1):6123. doi: 10.1038/s41467-021-26308-6. Nat Commun. 2021. PMID: 34675197 Free PMC article.

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