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Spatial epigenome-transcriptome co-profiling of mammalian tissues.
Zhang D, Deng Y, Kukanja P, Agirre E, Bartosovic M, Dong M, Ma C, Ma S, Su G, Bao S, Liu Y, Xiao Y, Rosoklija GB, Dwork AJ, Mann JJ, Leong KW, Boldrini M, Wang L, Haeussler M, Raphael BJ, Kluger Y, Castelo-Branco G, Fan R. Zhang D, et al. Nature. 2023 Apr;616(7955):113-122. doi: 10.1038/s41586-023-05795-1. Epub 2023 Mar 15. Nature. 2023. PMID: 36922587 Free PMC article.
Chromatin structure dynamics during the mitosis-to-G1 phase transition.
Zhang H, Emerson DJ, Gilgenast TG, Titus KR, Lan Y, Huang P, Zhang D, Wang H, Keller CA, Giardine B, Hardison RC, Phillips-Cremins JE, Blobel GA. Zhang H, et al. Among authors: zhang d. Nature. 2019 Dec;576(7785):158-162. doi: 10.1038/s41586-019-1778-y. Epub 2019 Nov 27. Nature. 2019. PMID: 31776509 Free PMC article.
Alteration of genome folding via contact domain boundary insertion.
Zhang D, Huang P, Sharma M, Keller CA, Giardine B, Zhang H, Gilgenast TG, Phillips-Cremins JE, Hardison RC, Blobel GA. Zhang D, et al. Among authors: zhang h. Nat Genet. 2020 Oct;52(10):1076-1087. doi: 10.1038/s41588-020-0680-8. Epub 2020 Aug 31. Nat Genet. 2020. PMID: 32868908 Free PMC article.
Engineering three-dimensional genome folding.
Zhang D, Lam J, Blobel GA. Zhang D, et al. Nat Genet. 2021 May;53(5):602-611. doi: 10.1038/s41588-021-00860-9. Epub 2021 May 6. Nat Genet. 2021. PMID: 33958782 Review.
Cohesin-mediated loop anchors confine the locations of human replication origins.
Emerson DJ, Zhao PA, Cook AL, Barnett RJ, Klein KN, Saulebekova D, Ge C, Zhou L, Simandi Z, Minsk MK, Titus KR, Wang W, Gong W, Zhang D, Yang L, Venev SV, Gibcus JH, Yang H, Sasaki T, Kanemaki MT, Yue F, Dekker J, Chen CL, Gilbert DM, Phillips-Cremins JE. Emerson DJ, et al. Among authors: zhang d. Nature. 2022 Jun;606(7915):812-819. doi: 10.1038/s41586-022-04803-0. Epub 2022 Jun 8. Nature. 2022. PMID: 35676475 Free PMC article.
Twisting, untwisting, and retwisting of elastic Co-based nanohelices.
Du W, Gao F, Cui P, Yu Z, Tong W, Wang J, Ren Z, Song C, Xu J, Ma H, Dang L, Zhang D, Lu Q, Jiang J, Wang J, Pi L, Sheng Z, Lu Q. Du W, et al. Among authors: zhang d. Nat Commun. 2023 Jul 22;14(1):4426. doi: 10.1038/s41467-023-40001-w. Nat Commun. 2023. PMID: 37481654 Free PMC article.
Surges in volcanic activity on the Moon about two billion years ago.
Tian HC, Zhang C, Yang W, Du J, Chen Y, Xiao Z, Mitchell RN, Hui H, Changela HG, Zhang TX, Tang X, Zhang D, Lin Y, Li X, Wu F. Tian HC, et al. Among authors: zhang tx, zhang c, zhang d. Nat Commun. 2023 Jun 22;14(1):3734. doi: 10.1038/s41467-023-39418-0. Nat Commun. 2023. PMID: 37349323 Free PMC article.
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