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GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics.
Zvyagin M, Brace A, Hippe K, Deng Y, Zhang B, Bohorquez CO, Clyde A, Kale B, Perez-Rivera D, Ma H, Mann CM, Irvin M, Pauloski JG, Ward L, Hayot-Sasson V, Emani M, Foreman S, Xie Z, Lin D, Shukla M, Nie W, Romero J, Dallago C, Vahdat A, Xiao C, Gibbs T, Foster I, Davis JJ, Papka ME, Brettin T, Stevens R, Anandkumar A, Vishwanath V, Ramanathan A. Zvyagin M, et al. Among authors: zhang b. bioRxiv [Preprint]. 2022 Nov 23:2022.10.10.511571. doi: 10.1101/2022.10.10.511571. bioRxiv. 2022. PMID: 36451881 Free PMC article. Preprint.
State-transition Modeling of Blood Transcriptome Predicts Disease Evolution and Treatment Response in Chronic Myeloid Leukemia.
Frankhouser DE, Rockne RC, Uechi L, Zhao D, Branciamore S, O'Meally D, Irizarry J, Ghoda L, Ali H, Trent JM, Forman S, Fu YH, Kuo YH, Zhang B, Marcucci G. Frankhouser DE, et al. Among authors: zhang b. bioRxiv [Preprint]. 2023 Dec 9:2023.10.11.561908. doi: 10.1101/2023.10.11.561908. bioRxiv. 2023. PMID: 37873185 Free PMC article. Updated. Preprint.
DAP12 deficiency alters microglia-oligodendrocyte communication and enhances resilience against tau toxicity.
Chen H, Fan L, Guo Q, Wong MY, Yu F, Foxe N, Wang W, Nessim A, Carling G, Liu B, Lopez-Lee C, Huang Y, Amin S, Patel T, Mok SA, Song WM, Zhang B, Ma Q, Fu H, Gan L, Luo W. Chen H, et al. Among authors: zhang b. bioRxiv [Preprint]. 2023 Oct 28:2023.10.26.563970. doi: 10.1101/2023.10.26.563970. bioRxiv. 2023. PMID: 37961594 Free PMC article. Preprint.
Leveraging IFNγ/CD38 regulation to unmask and target leukemia stem cells in acute myelogenous leukemia.
Murtadha M, Park M, Zhu Y, Caserta E, Dona AA, Singer M, Vahed H, Tasndoh T, Gonzalez A, Ly K, Sanchez JF, Chowdhury A, Pozhitkov A, Ghoda L, Li L, Zhang B, Krishnan A, Marcucci G, Williams J, Pichiorri F. Murtadha M, et al. Among authors: zhang b. bioRxiv [Preprint]. 2023 Mar 1:2023.02.27.530273. doi: 10.1101/2023.02.27.530273. bioRxiv. 2023. PMID: 36909542 Free PMC article. Preprint.
Chemokine receptor 5 signaling in PFC mediates stress susceptibility in female mice.
Lin HY, Cathomas F, Li L, Cuttoli RD, Guevara C, Bayrak CS, Wang Q, Gupta S, Chan KL, Shimo Y, Parise LF, Yuan C, Aubry AV, Chen F, Wong J, Morel C, Huntley GW, Zhang B, Russo SJ, Wang J. Lin HY, et al. Among authors: zhang b. bioRxiv [Preprint]. 2023 Aug 21:2023.08.18.553789. doi: 10.1101/2023.08.18.553789. bioRxiv. 2023. PMID: 37662400 Free PMC article. Preprint.
Transcriptomic landscape of human induced pluripotent stem cell-derived osteogenic differentiation identifies a regulatory role of KLF16.
Ru Y, Ma M, Zhou X, Kriti D, Cohen N, D'Souza S, Schaniel C, Motch Perrine SM, Kuo S, Pinto D, Housman G, Wu M, Holmes G, Schadt E, van Bakel H, Zhang B, Jabs EW. Ru Y, et al. Among authors: zhang b. bioRxiv [Preprint]. 2024 Feb 12:2024.02.11.579844. doi: 10.1101/2024.02.11.579844. bioRxiv. 2024. PMID: 38405902 Free PMC article. Preprint.
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