Zengler K - Search Results

1

EcoFABs: advancing microbiome science through standardized fabricated ecosystems.

Zengler K, Hofmockel K, Baliga NS, Behie SW, Bernstein HC, Brown JB, Dinneny JR, Floge SA, Forry SP, Hess M, Jackson SA, Jansson C, Lindemann SR, Pett-Ridge J, Maranas C, Venturelli OS, Wallenstein MD, Shank EA, Northen TR. Zengler K, et al. Nat Methods. 2019 Jul;16(7):567-571. doi: 10.1038/s41592-019-0465-0. Nat Methods. 2019. PMID: 31227812 Free PMC article.

2

ChiMera: an easy to use pipeline for bacterial genome based metabolic network reconstruction, evaluation and visualization.

Tamasco G, Kumar M, Zengler K, Silva-Rocha R, da Silva RR. Tamasco G, et al. Among authors: zengler k. BMC Bioinformatics. 2022 Nov 30;23(1):512. doi: 10.1186/s12859-022-05056-4. BMC Bioinformatics. 2022. PMID: 36451100 Free PMC article.

3

Unraveling interactions in microbial communities - from co-cultures to microbiomes.

Tan J, Zuniga C, Zengler K. Tan J, et al. Among authors: zengler k. J Microbiol. 2015 May;53(5):295-305. doi: 10.1007/s12275-015-5060-1. Epub 2015 May 3. J Microbiol. 2015. PMID: 25935300 Review.

4

Need for Laboratory Ecosystems To Unravel the Structures and Functions of Soil Microbial Communities Mediated by Chemistry.

Zhalnina K, Zengler K, Newman D, Northen TR. Zhalnina K, et al. Among authors: zengler k. mBio. 2018 Jul 17;9(4):e01175-18. doi: 10.1128/mBio.01175-18. mBio. 2018. PMID: 30018110 Free PMC article.

5

Establishing microbial composition measurement standards with reference frames.

Morton JT, Marotz C, Washburne A, Silverman J, Zaramela LS, Edlund A, Zengler K, Knight R. Morton JT, et al. Among authors: zengler k. Nat Commun. 2019 Jun 20;10(1):2719. doi: 10.1038/s41467-019-10656-5. Nat Commun. 2019. PMID: 31222023 Free PMC article.

6

Modelling approaches for studying the microbiome.

Kumar M, Ji B, Zengler K, Nielsen J. Kumar M, et al. Among authors: zengler k. Nat Microbiol. 2019 Aug;4(8):1253-1267. doi: 10.1038/s41564-019-0491-9. Epub 2019 Jul 23. Nat Microbiol. 2019. PMID: 31337891 Review.

7

Environmental stimuli drive a transition from cooperation to competition in synthetic phototrophic communities.

Zuñiga C, Li CT, Yu G, Al-Bassam MM, Li T, Jiang L, Zaramela LS, Guarnieri M, Betenbaugh MJ, Zengler K. Zuñiga C, et al. Among authors: zengler k. Nat Microbiol. 2019 Dec;4(12):2184-2191. doi: 10.1038/s41564-019-0567-6. Epub 2019 Oct 7. Nat Microbiol. 2019. PMID: 31591554

8

Synthetic microbial communities of heterotrophs and phototrophs facilitate sustainable growth.

Zuñiga C, Li T, Guarnieri MT, Jenkins JP, Li CT, Bingol K, Kim YM, Betenbaugh MJ, Zengler K. Zuñiga C, et al. Among authors: zengler k. Nat Commun. 2020 Jul 30;11(1):3803. doi: 10.1038/s41467-020-17612-8. Nat Commun. 2020. PMID: 32732991 Free PMC article.

9

A Reproducible and Tunable Synthetic Soil Microbial Community Provides New Insights into Microbial Ecology.

Coker J, Zhalnina K, Marotz C, Thiruppathy D, Tjuanta M, D'Elia G, Hailu R, Mahosky T, Rowan M, Northen TR, Zengler K. Coker J, et al. Among authors: zengler k. mSystems. 2022 Dec 20;7(6):e0095122. doi: 10.1128/msystems.00951-22. Epub 2022 Dec 6. mSystems. 2022. PMID: 36472419 Free PMC article.

10

A road map for the development of community systems (CoSy) biology.

Zengler K, Palsson BO. Zengler K, et al. Nat Rev Microbiol. 2012 Mar 27;10(5):366-72. doi: 10.1038/nrmicro2763. Nat Rev Microbiol. 2012. PMID: 22450377 Review.

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