Zemlyanskaya EV - Search Results

1

Fold-Change-Specific Enrichment Analysis (FSEA): Quantification of Transcriptional Response Magnitude for Functional Gene Groups.

Wiebe DS, Omelyanchuk NA, Mukhin AM, Grosse I, Lashin SA, Zemlyanskaya EV, Mironova VV. Wiebe DS, et al. Among authors: zemlyanskaya ev. Genes (Basel). 2020 Apr 17;11(4):434. doi: 10.3390/genes11040434. Genes (Basel). 2020. PMID: 32316383 Free PMC article.

2

Meta-analysis of transcriptome data identified TGTCNN motif variants associated with the response to plant hormone auxin in Arabidopsis thaliana L.

Zemlyanskaya EV, Wiebe DS, Omelyanchuk NA, Levitsky VG, Mironova VV. Zemlyanskaya EV, et al. J Bioinform Comput Biol. 2016 Apr;14(2):1641009. doi: 10.1142/S0219720016410092. J Bioinform Comput Biol. 2016. PMID: 27122321

3

The Interplay of Chromatin Landscape and DNA-Binding Context Suggests Distinct Modes of EIN3 Regulation in Arabidopsis thaliana.

Zemlyanskaya EV, Levitsky VG, Oshchepkov DY, Grosse I, Mironova VV. Zemlyanskaya EV, et al. Front Plant Sci. 2017 Jan 9;7:2044. doi: 10.3389/fpls.2016.02044. eCollection 2016. Front Plant Sci. 2017. PMID: 28119721 Free PMC article.

4

Auxin regulates functional gene groups in a fold-change-specific manner in Arabidopsis thaliana roots.

Omelyanchuk NA, Wiebe DS, Novikova DD, Levitsky VG, Klimova N, Gorelova V, Weinholdt C, Vasiliev GV, Zemlyanskaya EV, Kolchanov NA, Kochetov AV, Grosse I, Mironova VV. Omelyanchuk NA, et al. Among authors: zemlyanskaya ev. Sci Rep. 2017 May 30;7(1):2489. doi: 10.1038/s41598-017-02476-8. Sci Rep. 2017. PMID: 28559568 Free PMC article.

5

Deciphering Auxin-Ethylene Crosstalk at a Systems Level.

Zemlyanskaya EV, Omelyanchuk NA, Ubogoeva EV, Mironova VV. Zemlyanskaya EV, et al. Int J Mol Sci. 2018 Dec 14;19(12):4060. doi: 10.3390/ijms19124060. Int J Mol Sci. 2018. PMID: 30558241 Free PMC article. Review.

6

A single ChIP-seq dataset is sufficient for comprehensive analysis of motifs co-occurrence with MCOT package.

Levitsky V, Zemlyanskaya E, Oshchepkov D, Podkolodnaya O, Ignatieva E, Grosse I, Mironova V, Merkulova T. Levitsky V, et al. Nucleic Acids Res. 2019 Dec 2;47(21):e139. doi: 10.1093/nar/gkz800. Nucleic Acids Res. 2019. PMID: 31750523 Free PMC article.

7

Transcriptional regulation in plants: Using omics data to crack the cis-regulatory code.

Zemlyanskaya EV, Dolgikh VA, Levitsky VG, Mironova V. Zemlyanskaya EV, et al. Curr Opin Plant Biol. 2021 Oct;63:102058. doi: 10.1016/j.pbi.2021.102058. Epub 2021 Jun 5. Curr Opin Plant Biol. 2021. PMID: 34098218 Review.

8

Mechanisms of stress response in the root stem cell niche.

Ubogoeva EV, Zemlyanskaya EV, Xu J, Mironova V. Ubogoeva EV, et al. Among authors: zemlyanskaya ev. J Exp Bot. 2021 Oct 13;72(19):6746-6754. doi: 10.1093/jxb/erab274. J Exp Bot. 2021. PMID: 34111279 Free PMC article. Review.

9

Web-MCOT Server for Motif Co-Occurrence Search in ChIP-Seq Data.

Levitsky VG, Mukhin AM, Oshchepkov DY, Zemlyanskaya EV, Lashin SA. Levitsky VG, et al. Among authors: zemlyanskaya ev. Int J Mol Sci. 2022 Aug 11;23(16):8981. doi: 10.3390/ijms23168981. Int J Mol Sci. 2022. PMID: 36012247 Free PMC article.

10

CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana.

Lavrekha VV, Levitsky VG, Tsukanov AV, Bogomolov AG, Grigorovich DA, Omelyanchuk N, Ubogoeva EV, Zemlyanskaya EV, Mironova V. Lavrekha VV, et al. Among authors: zemlyanskaya ev. Front Plant Sci. 2022 Aug 18;13:942710. doi: 10.3389/fpls.2022.942710. eCollection 2022. Front Plant Sci. 2022. PMID: 36061801 Free PMC article.

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