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Page 1
Genome-centric view of carbon processing in thawing permafrost.
Woodcroft BJ, Singleton CM, Boyd JA, Evans PN, Emerson JB, Zayed AAF, Hoelzle RD, Lamberton TO, McCalley CK, Hodgkins SB, Wilson RM, Purvine SO, Nicora CD, Li C, Frolking S, Chanton JP, Crill PM, Saleska SR, Rich VI, Tyson GW. Woodcroft BJ, et al. Among authors: zayed aaf. Nature. 2018 Aug;560(7716):49-54. doi: 10.1038/s41586-018-0338-1. Epub 2018 Jul 16. Nature. 2018. PMID: 30013118
Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov.
Martinez MA, Woodcroft BJ, Ignacio Espinoza JC, Zayed AA, Singleton CM, Boyd JA, Li YF, Purvine S, Maughan H, Hodgkins SB, Anderson D, Sederholm M, Temperton B, Bolduc B, Saleska SR, Tyson GW, Rich VI; IsoGenie Project Coordinators; Saleska SR, Tyson GW, Rich VI. Martinez MA, et al. Syst Appl Microbiol. 2019 Jan;42(1):54-66. doi: 10.1016/j.syapm.2018.12.003. Epub 2018 Dec 14. Syst Appl Microbiol. 2019. PMID: 30616913 Free article.
Functional capacities of microbial communities to carry out large scale geochemical processes are maintained during ex situ anaerobic incubation.
Wilson RM, Zayed AA, Crossen KB, Woodcroft B, Tfaily MM, Emerson J, Raab N, Hodgkins SB, Verbeke B, Tyson G, Crill P, Saleska S, Chanton JP, Rich VI; IsoGenie Project Coordinators; IsoGenie Project Field Team. Wilson RM, et al. PLoS One. 2021 Feb 25;16(2):e0245857. doi: 10.1371/journal.pone.0245857. eCollection 2021. PLoS One. 2021. PMID: 33630888 Free PMC article.
Biosynthetic potential of the global ocean microbiome.
Paoli L, Ruscheweyh HJ, Forneris CC, Hubrich F, Kautsar S, Bhushan A, Lotti A, Clayssen Q, Salazar G, Milanese A, Carlström CI, Papadopoulou C, Gehrig D, Karasikov M, Mustafa H, Larralde M, Carroll LM, Sánchez P, Zayed AA, Cronin DR, Acinas SG, Bork P, Bowler C, Delmont TO, Gasol JM, Gossert AD, Kahles A, Sullivan MB, Wincker P, Zeller G, Robinson SL, Piel J, Sunagawa S. Paoli L, et al. Nature. 2022 Jul;607(7917):111-118. doi: 10.1038/s41586-022-04862-3. Epub 2022 Jun 22. Nature. 2022. PMID: 35732736 Free PMC article.
DRAM for distilling microbial metabolism to automate the curation of microbiome function.
Shaffer M, Borton MA, McGivern BB, Zayed AA, La Rosa SL, Solden LM, Liu P, Narrowe AB, Rodríguez-Ramos J, Bolduc B, Gazitúa MC, Daly RA, Smith GJ, Vik DR, Pope PB, Sullivan MB, Roux S, Wrighton KC. Shaffer M, et al. Nucleic Acids Res. 2020 Sep 18;48(16):8883-8900. doi: 10.1093/nar/gkaa621. Nucleic Acids Res. 2020. PMID: 32766782 Free PMC article.
Genome-resolved viral ecology in a marine oxygen minimum zone.
Vik D, Gazitúa MC, Sun CL, Zayed AA, Aldunate M, Mulholland MR, Ulloa O, Sullivan MB. Vik D, et al. Environ Microbiol. 2021 Jun;23(6):2858-2874. doi: 10.1111/1462-2920.15313. Epub 2020 Nov 23. Environ Microbiol. 2021. PMID: 33185964
Marine DNA Viral Macro- and Microdiversity from Pole to Pole.
Gregory AC, Zayed AA, Conceição-Neto N, Temperton B, Bolduc B, Alberti A, Ardyna M, Arkhipova K, Carmichael M, Cruaud C, Dimier C, Domínguez-Huerta G, Ferland J, Kandels S, Liu Y, Marec C, Pesant S, Picheral M, Pisarev S, Poulain J, Tremblay JÉ, Vik D; Tara Oceans Coordinators; Babin M, Bowler C, Culley AI, de Vargas C, Dutilh BE, Iudicone D, Karp-Boss L, Roux S, Sunagawa S, Wincker P, Sullivan MB. Gregory AC, et al. Cell. 2019 May 16;177(5):1109-1123.e14. doi: 10.1016/j.cell.2019.03.040. Epub 2019 Apr 25. Cell. 2019. PMID: 31031001 Free PMC article.
Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome.
Salazar G, Paoli L, Alberti A, Huerta-Cepas J, Ruscheweyh HJ, Cuenca M, Field CM, Coelho LP, Cruaud C, Engelen S, Gregory AC, Labadie K, Marec C, Pelletier E, Royo-Llonch M, Roux S, Sánchez P, Uehara H, Zayed AA, Zeller G, Carmichael M, Dimier C, Ferland J, Kandels S, Picheral M, Pisarev S, Poulain J; Tara Oceans Coordinators; Acinas SG, Babin M, Bork P, Bowler C, de Vargas C, Guidi L, Hingamp P, Iudicone D, Karp-Boss L, Karsenti E, Ogata H, Pesant S, Speich S, Sullivan MB, Wincker P, Sunagawa S. Salazar G, et al. Cell. 2019 Nov 14;179(5):1068-1083.e21. doi: 10.1016/j.cell.2019.10.014. Cell. 2019. PMID: 31730850 Free PMC article.
Diversity and ecological footprint of Global Ocean RNA viruses.
Dominguez-Huerta G, Zayed AA, Wainaina JM, Guo J, Tian F, Pratama AA, Bolduc B, Mohssen M, Zablocki O, Pelletier E, Delage E, Alberti A, Aury JM, Carradec Q, da Silva C, Labadie K, Poulain J; Tara Oceans Coordinators§; Bowler C, Eveillard D, Guidi L, Karsenti E, Kuhn JH, Ogata H, Wincker P, Culley A, Chaffron S, Sullivan MB. Dominguez-Huerta G, et al. Science. 2022 Jun 10;376(6598):1202-1208. doi: 10.1126/science.abn6358. Epub 2022 Jun 9. Science. 2022. PMID: 35679415
23 results