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Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic.
Lubin JH, Zardecki C, Dolan EM, Lu C, Shen Z, Dutta S, Westbrook JD, Hudson BP, Goodsell DS, Williams JK, Voigt M, Sarma V, Xie L, Venkatachalam T, Arnold S, Alvarado LHA, Catalfano K, Khan A, McCarthy E, Staggers S, Tinsley B, Trudeau A, Singh J, Whitmore L, Zheng H, Benedek M, Currier J, Dresel M, Duvvuru A, Dyszel B, Fingar E, Hennen EM, Kirsch M, Khan AA, Labrie-Cleary C, Laporte S, Lenkeit E, Martin K, Orellana M, de la Campa MO, Paredes I, Wheeler B, Rupert A, Sam A, See K, Zapata SS, Craig PA, Hall BL, Jiang J, Koeppe JR, Mills SA, Pikaart MJ, Roberts R, Bromberg Y, Hoyer JS, Duffy S, Tischfield J, Ruiz FX, Arnold E, Baum J, Sandberg J, Brannigan G, Khare SD, Burley SK. Lubin JH, et al. Among authors: zardecki c. bioRxiv [Preprint]. 2020 Dec 7:2020.12.01.406637. doi: 10.1101/2020.12.01.406637. bioRxiv. 2020. PMID: 33299989 Free PMC article. Updated. Preprint.
The RCSB Protein Data Bank: views of structural biology for basic and applied research and education.
Rose PW, Prlić A, Bi C, Bluhm WF, Christie CH, Dutta S, Green RK, Goodsell DS, Westbrook JD, Woo J, Young J, Zardecki C, Berman HM, Bourne PE, Burley SK. Rose PW, et al. Among authors: zardecki c. Nucleic Acids Res. 2015 Jan;43(Database issue):D345-56. doi: 10.1093/nar/gku1214. Epub 2014 Nov 26. Nucleic Acids Res. 2015. PMID: 25428375 Free PMC article.
Using the Tools and Resources of the RCSB Protein Data Bank.
Costanzo LD, Ghosh S, Zardecki C, Burley SK. Costanzo LD, et al. Among authors: zardecki c. Curr Protoc Bioinformatics. 2016 Sep 7;55:1.9.1-1.9.35. doi: 10.1002/cpbi.13. Curr Protoc Bioinformatics. 2016. PMID: 27603019
RCSB Protein Data Bank: Enabling biomedical research and drug discovery.
Goodsell DS, Zardecki C, Di Costanzo L, Duarte JM, Hudson BP, Persikova I, Segura J, Shao C, Voigt M, Westbrook JD, Young JY, Burley SK. Goodsell DS, et al. Among authors: zardecki c. Protein Sci. 2020 Jan;29(1):52-65. doi: 10.1002/pro.3730. Epub 2019 Nov 29. Protein Sci. 2020. PMID: 31531901 Free PMC article.
Insights from 20 years of the Molecule of the Month.
Goodsell DS, Zardecki C, Berman HM, Burley SK. Goodsell DS, et al. Among authors: zardecki c. Biochem Mol Biol Educ. 2020 Jul;48(4):350-355. doi: 10.1002/bmb.21360. Epub 2020 Jun 17. Biochem Mol Biol Educ. 2020. PMID: 32558264 Free PMC article.
Integrative illustration for coronavirus outreach.
Goodsell DS, Voigt M, Zardecki C, Burley SK. Goodsell DS, et al. Among authors: zardecki c. PLoS Biol. 2020 Aug 6;18(8):e3000815. doi: 10.1371/journal.pbio.3000815. eCollection 2020 Aug. PLoS Biol. 2020. PMID: 32760062 Free PMC article.
Virtual Boot Camp: COVID-19 evolution and structural biology.
Burley SK, Bromberg Y, Craig P, Duffy S, Dutta S, Hall BL, Hudson BP, Jiang J, D Khare S, Koeppe JR, Lubin JH, Mills SA, Pikaart MJ, Roberts R, Sarma V, Singh J, Tischfield JA, Xie L, Zardecki C. Burley SK, et al. Among authors: zardecki c. Biochem Mol Biol Educ. 2020 Sep;48(5):511-513. doi: 10.1002/bmb.21428. Epub 2020 Aug 14. Biochem Mol Biol Educ. 2020. PMID: 32797732 Free PMC article. No abstract available.
41 results