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Parsimonious Clone Tree Integration in cancer.
Sashittal P, Zaccaria S, El-Kebir M. Sashittal P, et al. Among authors: zaccaria s. Algorithms Mol Biol. 2022 Mar 14;17(1):3. doi: 10.1186/s13015-022-00209-9. Algorithms Mol Biol. 2022. PMID: 35282838 Free PMC article.
Complexity and algorithms for copy-number evolution problems.
El-Kebir M, Raphael BJ, Shamir R, Sharan R, Zaccaria S, Zehavi M, Zeira R. El-Kebir M, et al. Among authors: zaccaria s. Algorithms Mol Biol. 2017 May 16;12:13. doi: 10.1186/s13015-017-0103-2. eCollection 2017. Algorithms Mol Biol. 2017. PMID: 28515774 Free PMC article.
Subclonal Somatic Copy-Number Alterations Emerge and Dominate in Recurrent Osteosarcoma.
Kinnaman MD, Zaccaria S, Makohon-Moore A, Arnold B, Levine MF, Gundem G, Arango Ossa JE, Glodzik D, Rodríguez-Sánchez MI, Bouvier N, Li S, Stockfisch E, Dunigan M, Cobbs C, Bhanot UK, You D, Mullen K, Melchor JP, Ortiz MV, O'Donohue TJ, Slotkin EK, Wexler LH, Dela Cruz FS, Hameed MR, Glade Bender JL, Tap WD, Meyers PA, Papaemmanuil E, Kung AL, Iacobuzio-Donahue CA. Kinnaman MD, et al. Among authors: zaccaria s. Cancer Res. 2023 Nov 15;83(22):3796-3812. doi: 10.1158/0008-5472.CAN-23-0385. Cancer Res. 2023. PMID: 37812025 Free PMC article.
Quantifying the impact of immunotherapy on RNA dynamics in cancer.
Usaite I, Biswas D, Dijkstra K, Watkins TB, Pich O, Puttick C, Angelova M, Thakkar K, Hiley C, Birkbak N, Kok M, Zaccaria S, Wu Y, Litchfield K, Swanton C, Kanu N. Usaite I, et al. Among authors: zaccaria s. J Immunother Cancer. 2023 Nov;11(11):e007870. doi: 10.1136/jitc-2023-007870. J Immunother Cancer. 2023. PMID: 37914385 Free PMC article.
Identifying tumor clones in sparse single-cell mutation data.
Myers MA, Zaccaria S, Raphael BJ. Myers MA, et al. Among authors: zaccaria s. Bioinformatics. 2020 Jul 1;36(Suppl_1):i186-i193. doi: 10.1093/bioinformatics/btaa449. Bioinformatics. 2020. PMID: 32657385 Free PMC article.
87 results