Yuan Y - Search Results

1

Comprehensive molecular characterization of mitochondrial genomes in human cancers.

Yuan Y, Ju YS, Kim Y, Li J, Wang Y, Yoon CJ, Yang Y, Martincorena I, Creighton CJ, Weinstein JN, Xu Y, Han L, Kim HL, Nakagawa H, Park K, Campbell PJ, Liang H; PCAWG Consortium. Yuan Y, et al. Nat Genet. 2020 Mar;52(3):342-352. doi: 10.1038/s41588-019-0557-x. Epub 2020 Feb 5. Nat Genet. 2020. PMID: 32024997 Free PMC article.

2

BM-map: Bayesian mapping of multireads for next-generation sequencing data.

Ji Y, Xu Y, Zhang Q, Tsui KW, Yuan Y, Norris C Jr, Liang S, Liang H. Ji Y, et al. Among authors: yuan y. Biometrics. 2011 Dec;67(4):1215-24. doi: 10.1111/j.1541-0420.2011.01605.x. Epub 2011 Apr 22. Biometrics. 2011. PMID: 21517792 Free PMC article.

3

Predicting the lethal phenotype of the knockout mouse by integrating comprehensive genomic data.

Yuan Y, Xu Y, Xu J, Ball RL, Liang H. Yuan Y, et al. Bioinformatics. 2012 May 1;28(9):1246-52. doi: 10.1093/bioinformatics/bts120. Epub 2012 Mar 13. Bioinformatics. 2012. PMID: 22419784 Free PMC article.

4

BM-Map: an efficient software package for accurately allocating multireads of RNA-sequencing data.

Yuan Y, Norris C, Xu Y, Tsui KW, Ji Y, Liang H. Yuan Y, et al. BMC Genomics. 2012;13 Suppl 8(Suppl 8):S9. doi: 10.1186/1471-2164-13-S8-S9. Epub 2012 Dec 17. BMC Genomics. 2012. PMID: 23281802 Free PMC article.

5

The Cancer Genome Atlas Pan-Cancer analysis project.

Cancer Genome Atlas Research Network; Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM. Cancer Genome Atlas Research Network, et al. Nat Genet. 2013 Oct;45(10):1113-20. doi: 10.1038/ng.2764. Nat Genet. 2013. PMID: 24071849 Free PMC article.

6

Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas.

Omberg L, Ellrott K, Yuan Y, Kandoth C, Wong C, Kellen MR, Friend SH, Stuart J, Liang H, Margolin AA. Omberg L, et al. Among authors: yuan y. Nat Genet. 2013 Oct;45(10):1121-6. doi: 10.1038/ng.2761. Nat Genet. 2013. PMID: 24071850 Free PMC article.

7

Gene co-expression network analysis reveals common system-level properties of prognostic genes across cancer types.

Yang Y, Han L, Yuan Y, Li J, Hei N, Liang H. Yang Y, et al. Among authors: yuan y. Nat Commun. 2014;5:3231. doi: 10.1038/ncomms4231. Nat Commun. 2014. PMID: 24488081 Free PMC article.

8

α-catenin acts as a tumour suppressor in E-cadherin-negative basal-like breast cancer by inhibiting NF-κB signalling.

Piao HL, Yuan Y, Wang M, Sun Y, Liang H, Ma L. Piao HL, et al. Among authors: yuan y. Nat Cell Biol. 2014 Mar;16(3):245-54. doi: 10.1038/ncb2909. Epub 2014 Feb 9. Nat Cell Biol. 2014. PMID: 24509793 Free PMC article.

9

miR-100 induces epithelial-mesenchymal transition but suppresses tumorigenesis, migration and invasion.

Chen D, Sun Y, Yuan Y, Han Z, Zhang P, Zhang J, You MJ, Teruya-Feldstein J, Wang M, Gupta S, Hung MC, Liang H, Ma L. Chen D, et al. Among authors: yuan y. PLoS Genet. 2014 Feb 27;10(2):e1004177. doi: 10.1371/journal.pgen.1004177. eCollection 2014 Feb. PLoS Genet. 2014. PMID: 24586203 Free PMC article.

10

A community effort to assess and improve drug sensitivity prediction algorithms.

Costello JC, Heiser LM, Georgii E, Gönen M, Menden MP, Wang NJ, Bansal M, Ammad-ud-din M, Hintsanen P, Khan SA, Mpindi JP, Kallioniemi O, Honkela A, Aittokallio T, Wennerberg K; NCI DREAM Community; Collins JJ, Gallahan D, Singer D, Saez-Rodriguez J, Kaski S, Gray JW, Stolovitzky G. Costello JC, et al. Nat Biotechnol. 2014 Dec;32(12):1202-12. doi: 10.1038/nbt.2877. Epub 2014 Jun 1. Nat Biotechnol. 2014. PMID: 24880487 Free PMC article.

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