Yu J - Search Results

1

DNA-Stable Isotope Probing Shotgun Metagenomics Reveals the Resilience of Active Microbial Communities to Biochar Amendment in Oxisol Soil.

Yu J, Pavia MJ, Deem LM, Crow SE, Deenik JL, Penton CR. Yu J, et al. Front Microbiol. 2020 Nov 17;11:587972. doi: 10.3389/fmicb.2020.587972. eCollection 2020. Front Microbiol. 2020. PMID: 33329461 Free PMC article.

2

Comparative Metagenomics Reveals Enhanced Nutrient Cycling Potential after 2 Years of Biochar Amendment in a Tropical Oxisol.

Yu J, Deem LM, Crow SE, Deenik J, Penton CR. Yu J, et al. Appl Environ Microbiol. 2019 May 16;85(11):e02957-18. doi: 10.1128/AEM.02957-18. Print 2019 Jun 1. Appl Environ Microbiol. 2019. PMID: 30952661 Free PMC article.

3

Size Matters: Assessing Optimum Soil Sample Size for Fungal and Bacterial Community Structure Analyses Using High Throughput Sequencing of rRNA Gene Amplicons.

Penton CR, Gupta VV, Yu J, Tiedje JM. Penton CR, et al. Among authors: yu j. Front Microbiol. 2016 Jun 2;7:824. doi: 10.3389/fmicb.2016.00824. eCollection 2016. Front Microbiol. 2016. PMID: 27313569 Free PMC article.

4

Diazotroph Diversity and Nitrogen Fixation in Summer Active Perennial Grasses in a Mediterranean Region Agricultural Soil.

Gupta VVSR, Zhang B, Penton CR, Yu J, Tiedje JM. Gupta VVSR, et al. Among authors: yu j. Front Mol Biosci. 2019 Nov 5;6:115. doi: 10.3389/fmolb.2019.00115. eCollection 2019. Front Mol Biosci. 2019. PMID: 31750314 Free PMC article.

5

MicroNiche: an R package for assessing microbial niche breadth and overlap from amplicon sequencing data.

Finn DR, Yu J, Ilhan ZE, Fernandes VMC, Penton CR, Krajmalnik-Brown R, Garcia-Pichel F, Vogel TM. Finn DR, et al. Among authors: yu j. FEMS Microbiol Ecol. 2020 Aug 1;96(8):fiaa131. doi: 10.1093/femsec/fiaa131. FEMS Microbiol Ecol. 2020. PMID: 32589193

6

Winter warming in Alaska accelerates lignin decomposition contributed by Proteobacteria.

Tao X, Feng J, Yang Y, Wang G, Tian R, Fan F, Ning D, Bates CT, Hale L, Yuan MM, Wu L, Gao Q, Lei J, Schuur EAG, Yu J, Bracho R, Luo Y, Konstantinidis KT, Johnston ER, Cole JR, Penton CR, Tiedje JM, Zhou J. Tao X, et al. Among authors: yu j. Microbiome. 2020 Jun 5;8(1):84. doi: 10.1186/s40168-020-00838-5. Microbiome. 2020. PMID: 32503635 Free PMC article.

7

Agricultural practices drive biological loads, seasonal patterns and potential pathogens in the aerobiome of a mixed-land-use dryland.

Finn DR, Maldonado J, de Martini F, Yu J, Penton CR, Fontenele RS, Schmidlin K, Kraberger S, Varsani A, Gile GH, Barker B, Kollath DR, Muenich RL, Herckes P, Fraser M, Garcia-Pichel F. Finn DR, et al. Among authors: yu j. Sci Total Environ. 2021 Dec 1;798:149239. doi: 10.1016/j.scitotenv.2021.149239. Epub 2021 Jul 22. Sci Total Environ. 2021. PMID: 34325138

8

Vineyard Soil Microbiome Composition Related to Rotundone Concentration in Australian Cool Climate 'Peppery' Shiraz Grapes.

Gupta VVSR, Bramley RGV, Greenfield P, Yu J, Herderich MJ. Gupta VVSR, et al. Among authors: yu j. Front Microbiol. 2019 Jul 16;10:1607. doi: 10.3389/fmicb.2019.01607. eCollection 2019. Front Microbiol. 2019. PMID: 31379773 Free PMC article.

9

Experimental Evolution of Campylobacter jejuni Leads to Loss of Motility, rpoN (σ54) Deletion and Genome Reduction.

Sher AA, Jerome JP, Bell JA, Yu J, Kim HY, Barrick JE, Mansfield LS. Sher AA, et al. Among authors: yu j. Front Microbiol. 2020 Nov 6;11:579989. doi: 10.3389/fmicb.2020.579989. eCollection 2020. Front Microbiol. 2020. PMID: 33240235 Free PMC article.

10

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy.

Zhu Q, Huang S, Gonzalez A, McGrath I, McDonald D, Haiminen N, Armstrong G, Vázquez-Baeza Y, Yu J, Kuczynski J, Sepich-Poore GD, Swafford AD, Das P, Shaffer JP, Lejzerowicz F, Belda-Ferre P, Havulinna AS, Méric G, Niiranen T, Lahti L, Salomaa V, Kim HC, Jain M, Inouye M, Gilbert JA, Knight R. Zhu Q, et al. Among authors: yu j. mSystems. 2022 Apr 26;7(2):e0016722. doi: 10.1128/msystems.00167-22. Epub 2022 Apr 4. mSystems. 2022. PMID: 35369727 Free PMC article.

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