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Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.
Karthikeyan S, Levy JI, De Hoff P, Humphrey G, Birmingham A, Jepsen K, Farmer S, Tubb HM, Valles T, Tribelhorn CE, Tsai R, Aigner S, Sathe S, Moshiri N, Henson B, Mark AM, Hakim A, Baer NA, Barber T, Belda-Ferre P, Chacón M, Cheung W, Cresini ES, Eisner ER, Lastrella AL, Lawrence ES, Marotz CA, Ngo TT, Ostrander T, Plascencia A, Salido RA, Seaver P, Smoot EW, McDonald D, Neuhard RM, Scioscia AL, Satterlund AM, Simmons EH, Abelman DB, Brenner D, Bruner JC, Buckley A, Ellison M, Gattas J, Gonias SL, Hale M, Hawkins F, Ikeda L, Jhaveri H, Johnson T, Kellen V, Kremer B, Matthews G, McLawhon RW, Ouillet P, Park D, Pradenas A, Reed S, Riggs L, Sanders A, Sollenberger B, Song A, White B, Winbush T, Aceves CM, Anderson C, Gangavarapu K, Hufbauer E, Kurzban E, Lee J, Matteson NL, Parker E, Perkins SA, Ramesh KS, Robles-Sikisaka R, Schwab MA, Spencer E, Wohl S, Nicholson L, McHardy IH, Dimmock DP, Hobbs CA, Bakhtar O, Harding A, Mendoza A, Bolze A, Becker D, Cirulli ET, Isaksson M, Schiabor Barrett KM, Washington NL, Malone JD, Schafer AM, Gurfield N, Stous S, Fielding-Miller R, Garfein RS, Gaines T, Anderson C, Martin NK, Schooley R, Austin B, MacCannell DR, Kingsmore SF, Lee W, Shah S, Mc… See abstract for full author list ➔ Karthikeyan S, et al. Among authors: yu at. Nature. 2022 Sep;609(7925):101-108. doi: 10.1038/s41586-022-05049-6. Epub 2022 Jul 7. Nature. 2022. PMID: 35798029 Free PMC article.
A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage.
Deng X, Gu W, Federman S, du Plessis L, Pybus OG, Faria N, Wang C, Yu G, Pan CY, Guevara H, Sotomayor-Gonzalez A, Zorn K, Gopez A, Servellita V, Hsu E, Miller S, Bedford T, Greninger AL, Roychoudhury P, Starita LM, Famulare M, Chu HY, Shendure J, Jerome KR, Anderson C, Gangavarapu K, Zeller M, Spencer E, Andersen KG, MacCannell D, Paden CR, Li Y, Zhang J, Tong S, Armstrong G, Morrow S, Willis M, Matyas BT, Mase S, Kasirye O, Park M, Chan C, Yu AT, Chai SJ, Villarino E, Bonin B, Wadford DA, Chiu CY. Deng X, et al. Among authors: yu at, yu g. medRxiv [Preprint]. 2020 Mar 30:2020.03.27.20044925. doi: 10.1101/2020.03.27.20044925. medRxiv. 2020. PMID: 32511579 Free PMC article. Updated. Preprint.
Notes from the Field: Early Evidence of the SARS-CoV-2 B.1.1.529 (Omicron) Variant in Community Wastewater - United States, November-December 2021.
Kirby AE, Welsh RM, Marsh ZA, Yu AT, Vugia DJ, Boehm AB, Wolfe MK, White BJ, Matzinger SR, Wheeler A, Bankers L, Andresen K, Salatas C; New York City Department of Environmental Protection; Gregory DA, Johnson MC, Trujillo M, Kannoly S, Smyth DS, Dennehy JJ, Sapoval N, Ensor K, Treangen T, Stadler LB, Hopkins L. Kirby AE, et al. Among authors: yu at. MMWR Morb Mortal Wkly Rep. 2022 Jan 21;71(3):103-105. doi: 10.15585/mmwr.mm7103a5. MMWR Morb Mortal Wkly Rep. 2022. PMID: 35051130 Free PMC article. No abstract available.
Use of Wastewater for Mpox Outbreak Surveillance in California.
Wolfe MK, Yu AT, Duong D, Rane MS, Hughes B, Chan-Herur V, Donnelly M, Chai S, White BJ, Vugia DJ, Boehm AB. Wolfe MK, et al. Among authors: yu at. N Engl J Med. 2023 Feb 9;388(6):570-572. doi: 10.1056/NEJMc2213882. Epub 2023 Jan 18. N Engl J Med. 2023. PMID: 36652340 No abstract available.
High-Frequency, High-Throughput Quantification of SARS-CoV-2 RNA in Wastewater Settled Solids at Eight Publicly Owned Treatment Works in Northern California Shows Strong Association with COVID-19 Incidence.
Wolfe MK, Topol A, Knudson A, Simpson A, White B, Vugia DJ, Yu AT, Li L, Balliet M, Stoddard P, Han GS, Wigginton KR, Boehm AB. Wolfe MK, et al. Among authors: yu at. mSystems. 2021 Oct 26;6(5):e0082921. doi: 10.1128/mSystems.00829-21. Epub 2021 Sep 14. mSystems. 2021. PMID: 34519528 Free PMC article.
Scaling of SARS-CoV-2 RNA in Settled Solids from Multiple Wastewater Treatment Plants to Compare Incidence Rates of Laboratory-Confirmed COVID-19 in Their Sewersheds.
Wolfe MK, Archana A, Catoe D, Coffman MM, Dorevich S, Graham KE, Kim S, Grijalva LM, Roldan-Hernandez L, Silverman AI, Sinnott-Armstrong N, Vugia DJ, Yu AT, Zambrana W, Wigginton KR, Boehm AB. Wolfe MK, et al. Among authors: yu at. Environ Sci Technol Lett. 2021 Apr 12;8(5):398-404. doi: 10.1021/acs.estlett.1c00184. eCollection 2021 May 11. Environ Sci Technol Lett. 2021. PMID: 37566351
Extensively Drug-Resistant Typhoid Fever in the United States.
Hughes MJ, Birhane MG, Dorough L, Reynolds JL, Caidi H, Tagg KA, Snyder CM, Yu AT, Altman SM, Boyle MM, Thomas D, Robbins AE, Waechter HA, Cody I, Mintz ED, Gutelius B, Langley G, Francois Watkins LK. Hughes MJ, et al. Among authors: yu at. Open Forum Infect Dis. 2021 Nov 16;8(12):ofab572. doi: 10.1093/ofid/ofab572. eCollection 2021 Dec. Open Forum Infect Dis. 2021. PMID: 34917695 Free PMC article.
Effects of precipitation, heat, and drought on incidence and expansion of coccidioidomycosis in western USA: a longitudinal surveillance study.
Head JR, Sondermeyer-Cooksey G, Heaney AK, Yu AT, Jones I, Bhattachan A, Campo SK, Wagner R, Mgbara W, Phillips S, Keeney N, Taylor J, Eisen E, Lettenmaier DP, Hubbard A, Okin GS, Vugia DJ, Jain S, Remais JV. Head JR, et al. Among authors: yu at. Lancet Planet Health. 2022 Oct;6(10):e793-e803. doi: 10.1016/S2542-5196(22)00202-9. Lancet Planet Health. 2022. PMID: 36208642 Free PMC article.
71 results