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An integrated workflow for phenazine-modifying enzyme characterization.
Coates RC, Bowen BP, Oberortner E, Thomashow L, Hadjithomas M, Zhao Z, Ke J, Silva L, Louie K, Wang G, Robinson D, Tarver A, Hamilton M, Lubbe A, Feltcher M, Dangl JL, Pati A, Weller D, Northen TR, Cheng JF, Mouncey NJ, Deutsch S, Yoshikuni Y. Coates RC, et al. Among authors: yoshikuni y. J Ind Microbiol Biotechnol. 2018 Jul;45(7):567-577. doi: 10.1007/s10295-018-2025-5. Epub 2018 Mar 15. J Ind Microbiol Biotechnol. 2018. PMID: 29546662
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.
Mukherjee S, Seshadri R, Varghese NJ, Eloe-Fadrosh EA, Meier-Kolthoff JP, Göker M, Coates RC, Hadjithomas M, Pavlopoulos GA, Paez-Espino D, Yoshikuni Y, Visel A, Whitman WB, Garrity GM, Eisen JA, Hugenholtz P, Pati A, Ivanova NN, Woyke T, Klenk HP, Kyrpides NC. Mukherjee S, et al. Among authors: yoshikuni y. Nat Biotechnol. 2017 Jul;35(7):676-683. doi: 10.1038/nbt.3886. Epub 2017 Jun 12. Nat Biotechnol. 2017. PMID: 28604660
Genome-wide identification of bacterial plant colonization genes.
Cole BJ, Feltcher ME, Waters RJ, Wetmore KM, Mucyn TS, Ryan EM, Wang G, Ul-Hasan S, McDonald M, Yoshikuni Y, Malmstrom RR, Deutschbauer AM, Dangl JL, Visel A. Cole BJ, et al. Among authors: yoshikuni y. PLoS Biol. 2017 Sep 22;15(9):e2002860. doi: 10.1371/journal.pbio.2002860. eCollection 2017 Sep. PLoS Biol. 2017. PMID: 28938018 Free PMC article.
New voyages to explore the natural product galaxy.
Mouncey NJ, Otani H, Udwary D, Yoshikuni Y. Mouncey NJ, et al. Among authors: yoshikuni y. J Ind Microbiol Biotechnol. 2019 Mar;46(3-4):273-279. doi: 10.1007/s10295-018-02122-w. Epub 2019 Jan 4. J Ind Microbiol Biotechnol. 2019. PMID: 30610411
Engineered Root Bacteria Release Plant-Available Phosphate from Phytate.
Shulse CN, Chovatia M, Agosto C, Wang G, Hamilton M, Deutsch S, Yoshikuni Y, Blow MJ. Shulse CN, et al. Among authors: yoshikuni y. Appl Environ Microbiol. 2019 Aug 29;85(18):e01210-19. doi: 10.1128/AEM.01210-19. Print 2019 Sep 15. Appl Environ Microbiol. 2019. PMID: 31285192 Free PMC article.
CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria.
Wang G, Zhao Z, Ke J, Engel Y, Shi YM, Robinson D, Bingol K, Zhang Z, Bowen B, Louie K, Wang B, Evans R, Miyamoto Y, Cheng K, Kosina S, De Raad M, Silva L, Luhrs A, Lubbe A, Hoyt DW, Francavilla C, Otani H, Deutsch S, Washton NM, Rubin EM, Mouncey NJ, Visel A, Northen T, Cheng JF, Bode HB, Yoshikuni Y. Wang G, et al. Among authors: yoshikuni y. Nat Microbiol. 2019 Dec;4(12):2498-2510. doi: 10.1038/s41564-019-0573-8. Epub 2019 Oct 14. Nat Microbiol. 2019. PMID: 31611640
113 results