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Molecular recording of mammalian embryogenesis.
Chan MM, Smith ZD, Grosswendt S, Kretzmer H, Norman TM, Adamson B, Jost M, Quinn JJ, Yang D, Jones MG, Khodaverdian A, Yosef N, Meissner A, Weissman JS. Chan MM, et al. Among authors: yosef n. Nature. 2019 Jun;570(7759):77-82. doi: 10.1038/s41586-019-1184-5. Epub 2019 May 13. Nature. 2019. PMID: 31086336 Free PMC article.
Dynamic regulatory network controlling TH17 cell differentiation.
Yosef N, Shalek AK, Gaublomme JT, Jin H, Lee Y, Awasthi A, Wu C, Karwacz K, Xiao S, Jorgolli M, Gennert D, Satija R, Shakya A, Lu DY, Trombetta JJ, Pillai MR, Ratcliffe PJ, Coleman ML, Bix M, Tantin D, Park H, Kuchroo VK, Regev A. Yosef N, et al. Nature. 2013 Apr 25;496(7446):461-8. doi: 10.1038/nature11981. Epub 2013 Mar 6. Nature. 2013. PMID: 23467089 Free PMC article.
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells.
Shalek AK, Satija R, Adiconis X, Gertner RS, Gaublomme JT, Raychowdhury R, Schwartz S, Yosef N, Malboeuf C, Lu D, Trombetta JJ, Gennert D, Gnirke A, Goren A, Hacohen N, Levin JZ, Park H, Regev A. Shalek AK, et al. Among authors: yosef n. Nature. 2013 Jun 13;498(7453):236-40. doi: 10.1038/nature12172. Epub 2013 May 19. Nature. 2013. PMID: 23685454 Free PMC article.
Single-cell RNA-seq reveals dynamic paracrine control of cellular variation.
Shalek AK, Satija R, Shuga J, Trombetta JJ, Gennert D, Lu D, Chen P, Gertner RS, Gaublomme JT, Yosef N, Schwartz S, Fowler B, Weaver S, Wang J, Wang X, Ding R, Raychowdhury R, Friedman N, Hacohen N, Park H, May AP, Regev A. Shalek AK, et al. Among authors: yosef n. Nature. 2014 Jun 19;510(7505):363-9. doi: 10.1038/nature13437. Epub 2014 Jun 11. Nature. 2014. PMID: 24919153 Free PMC article.
A new way to build cell lineages.
Zhang X, Yosef N. Zhang X, et al. Among authors: yosef n. Elife. 2017 Mar 23;6:e25654. doi: 10.7554/eLife.25654. Elife. 2017. PMID: 28332977 Free PMC article.
The Human Cell Atlas.
Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, Bodenmiller B, Campbell P, Carninci P, Clatworthy M, Clevers H, Deplancke B, Dunham I, Eberwine J, Eils R, Enard W, Farmer A, Fugger L, Göttgens B, Hacohen N, Haniffa M, Hemberg M, Kim S, Klenerman P, Kriegstein A, Lein E, Linnarsson S, Lundberg E, Lundeberg J, Majumder P, Marioni JC, Merad M, Mhlanga M, Nawijn M, Netea M, Nolan G, Pe'er D, Phillipakis A, Ponting CP, Quake S, Reik W, Rozenblatt-Rosen O, Sanes J, Satija R, Schumacher TN, Shalek A, Shapiro E, Sharma P, Shin JW, Stegle O, Stratton M, Stubbington MJT, Theis FJ, Uhlen M, van Oudenaarden A, Wagner A, Watt F, Weissman J, Wold B, Xavier R, Yosef N; Human Cell Atlas Meeting Participants. Regev A, et al. Among authors: yosef n. Elife. 2017 Dec 5;6:e27041. doi: 10.7554/eLife.27041. Elife. 2017. PMID: 29206104 Free PMC article.
Deep generative modeling for single-cell transcriptomics.
Lopez R, Regier J, Cole MB, Jordan MI, Yosef N. Lopez R, et al. Among authors: yosef n. Nat Methods. 2018 Dec;15(12):1053-1058. doi: 10.1038/s41592-018-0229-2. Epub 2018 Nov 30. Nat Methods. 2018. PMID: 30504886 Free PMC article.
Connectivity problems on heterogeneous graphs.
Wu J, Khodaverdian A, Weitz B, Yosef N. Wu J, et al. Among authors: yosef n. Algorithms Mol Biol. 2019 Mar 8;14:5. doi: 10.1186/s13015-019-0141-z. eCollection 2019. Algorithms Mol Biol. 2019. PMID: 30899321 Free PMC article.
193 results